|
|
| Map Set Name: |
TTU IRIR 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
TTU IRIR 2000 |
[ Download Map Set Data ] |
| Accession ID: |
irir |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
20 August, 2000 |
|
|
Description:
|
A subset of 166 RILs, chosen randomly from a population of 475 lines derived from a cross between two advanced breeding lines, IR58821-23-B-1-2-1 and IR52561-UBN-1-1-2, was used as the mapping population. The RILs were developed by single-seed descent to the F7 generation at IRRI. Both parentals were indica types. A total of 399 markers (96 RFLP and 303 AFLP) were mapped at an average distance of 5 cM between markers. The total map distance was 2022 cM with a LOD threshold of 3.0. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Niigata RFLP 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
Niigata RFLP 2000 |
[ Download Map Set Data ] |
| Accession ID: |
fuy2000a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
31 December, 2000 |
|
|
Description:
|
The population of 202 F2 progeny was derived from an indica/japonica cross between Korean variety Milyang 23 and Japanese variety Akihikari. A total of distance of 1355 cM was mapped using 119 RFLP markers. Except for chromosomes 1 and 4, segregation distortions were detected in a total of 16 chromosome regions. Skew in favor of indica alleles was recognized on chromosomes 2 and 3 (two regions; 5, 6, 9 and 11 (two regions); and 12 (two regions). Skew in favor of japonica alleles was found on chromosomes 7, 8 and 10 (two regions). An increase of heterozygote was detected on chromosomes 2 and 9. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Cornell SSR 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell SSR 2001 |
[ Download Map Set Data ] |
| Accession ID: |
cu-dh-2001 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
01 August, 2001 |
|
|
Description:
|
The mapping population consists of doubled haploid lines derived via anther culture from an inter subspecific cross between indica cultivar IR64 and tropical japonica cultivar Azucena. Out of the original 135 lines, a subset of 96 were randomly selected for mapping. Using MAPMAKER 2.0 software, markers with LOD > 2.0 were integrated into the framework maps and those with LOD < 2.0 were assigned to the most likely intervals. Centromere positions were estimated from Singh et al. (1996) and Cheng et al. (2001). |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
IGCN sativa/eichingeri RFLP |
[ Show Only This Set ] |
| Abbreviated Name: |
IGCN sativa/eichingeri RFLP |
[ Download Map Set Data ] |
| Accession ID: |
yah2001a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa x Oryza eichingeri (Oryza sativa x Oryza eichingeri) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
02 February, 2001 |
|
|
Description:
|
Restriction fragment length polymorphism (RFLP) analysis and GISH (genomic in situ hybridization) were performed on euploid plants derived from crosses between Oryza sativa (2n = 24, AA) IRGC accession:02428 and two IRGC accessions, 105159 and 105163 of O. eichingeri (2n = 24, CC). The 164 RFLP markers used in this study cover all 12 rice chromosomes, with a marker interval of 0.4-46.3 cM. 60 of the 67 euploid plants were identified as introgression lines, each carrying 1-6 small O. eichinger segments integrated on chromosomes 1, 2, 6, or 10, identified by markers RG236, R210, G275, C601, G89-2B, RG752. In the somatic chromosome preparations of F1 hybrid, O. eichingeri chromosomes, fluorescing greenish-yellow in the sequential GISH, appeared to be longer and to contain more heterochromatin than O. sativa ones. In addition, GISH identification presented direct evidence for the transfer of small segments from O. eichingeri to Oryza sativa chromosome(s) which were subsequently recognized according to their condensation pattern, arm ratio, and chromosome length.
The two donor O. eichingeri parents showed high level of resistance to brown planthopper, while the cultivated rice variety was susceptible (Heinrichs et al. 1985). Intergenomic F1 hybrids obtained by embryo rescue were backcrossed to 02428 and, meanwhile, self-pollinated to produce BC1 and F2 plants; both were identified as allotriploids (2n = 36, AAC) due to the formation of reduced gametes in the F1 plants (Yan et al. 1997). In this investigation, a total of 67 cytologically identified euploid plants, 64 from the backcross progeny of the above allotriploids and three from the BC4 generation of a monosomic alien addition line, were subjected to RFLP analysis. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Cornell RFLP 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell RFLP 2001 |
[ Download Map Set Data ] |
| Accession ID: |
cu-sl-2001 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa x Oryza longistaminata (Oryza sativa x Oryza longistaminata) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
23 October, 2002 |
|
|
Description:
|
The mapping population was derived from a backcross between cultivated rice, Oryza sativa, and its wild African relative, Oryza longistaminata. This is an updated version of the Cornell RFLP 1994 map reported in Causse et al., 1994 and revised in Wilson et al., 1999. Of the original 113 plants, 19 individuals were found to have more than 45% missing data; these individuals were not included in constructing this updated map. The map was generated using MAPMAKER with a LOD threshold of 2.5. Centromere positions were estimated from Singh et al. (1996) and Cheng et al. (2001). |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Cornell RFLP 1994 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell RFLP 1994 |
[ Download Map Set Data ] |
| Accession ID: |
cu-sl-1994 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa x Oryza longistaminata (Oryza sativa x Oryza longistaminata) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
31 December, 1994 |
|
|
Description:
|
The mapping population was derived from a backcross between cultivated rice, Oryza sativa, and its wild African relative, Oryza longistaminata. 113 lines were evaluated, using a LOD threshold of 2.5. This is the original 1994 version of the map using the BS125/2/BS125/WLO2 mapping population. The most up-to-date version is Cornell RFLP 2001 and users are encouraged to use that more accurate version. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Huazhong RFLP 1997 |
[ Show Only This Set ] |
| Abbreviated Name: |
Huazhong RFLP 1997 |
[ Download Map Set Data ] |
| Accession ID: |
hz-rflp-1997 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa x Oryza rufipogon (Oryza sativa x Oryza rufipogon) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
31 December, 1997 |
|
|
Description:
|
This map is based on a cross betwen the indica cultivar Aijiao Nante and the Oryza rufipogon accession P16. An F2 population of 172 lines was raised and maintained vegetatively. A framework map of 359 loci was constructed using MAPMAKER 3.0 with a LOD threshold of 3.0. An additional 53 loci with LOD scores less than or equal 2.0 were placed on their most probable intervals.
Reference:
Xiong et al. 1997. Rice Genet Newsl. 14:110-116 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
JIC LGD1/ICMP 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
JIC LGD1/ICMP 2004 |
[ Download Map Set Data ] |
| Accession ID: |
qix2004c |
[ View Map Set In Matrix ] |
| Species: |
Pennisetum glaucum (Pearl Millet) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
10 September, 2004 |
|
|
Description:
|
An F2 population of 133 lines was derived from a cross of two inbred lines LGD 1-B-10 x ICMP 85410. The population was originally developed by Liu et al (1994). The parents of this cross differed by a translocation involving linkage groups 1 and 2. The markers have been split into two linkage groups based on information from other crosses.
This map set is provided courtesy of K. Devos. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
JIC 81B/ICMP 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
JIC 81B/ICMP 2004 |
[ Download Map Set Data ] |
| Accession ID: |
qix2004b |
[ View Map Set In Matrix ] |
| Species: |
Pennisetum glaucum (Pearl Millet) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
13 September, 2004 |
|
|
Description:
|
The mapping population was generated from a cross between the inbred lines 81B and ICMP 451. It consisted of 157 F2 progeny. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
JIC ICMB/863B 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
JIC ICMB/863B 2004 |
[ Download Map Set Data ] |
| Accession ID: |
qix2004a |
[ View Map Set In Matrix ] |
| Species: |
Pennisetum glaucum (Pearl Millet) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
13 September, 2004 |
|
|
Description:
|
The mapping population consisted of 149 F2 progeny from the inbred lines ICMB 841 x 863B. The population was originally developed by Yadav et al. (2004) and showed segregation for drought tolerance. The map set is provided courtesy of K. Devos. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
JIC PT732B/P1449 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
JIC PT732B/P1449 2004 |
[ Download Map Set Data ] |
| Accession ID: |
qix2004d |
[ View Map Set In Matrix ] |
| Species: |
Pennisetum glaucum (Pearl Millet) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
13 September, 2004 |
|
|
Description:
|
The mapping population consisted of 131 F2 progeny of the inbred lines PT 732B x P1449-2, which showed segregation for downy mildew resistance. The map set is provided courtesy of K. Devos. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Rye, Ds2 x RxL10 1993 |
[ Show Only This Set ] |
| Abbreviated Name: |
Rye, Ds2 x RxL10 1993 |
[ Download Map Set Data ] |
| Accession ID: |
dek1993a |
[ View Map Set In Matrix ] |
| Species: |
Secale cereale (Rye) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
31 December, 1993 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Paterson 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
Paterson 2003 |
[ Download Map Set Data ] |
| Accession ID: |
patt2003 |
[ View Map Set In Matrix ] |
| Species: |
Sorghum bicolor (Sorghum) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
16 December, 2003 |
|
|
Description:
|
Sorghum map developed at the Plant Genome Mapping Laboratory at the University of Georgia. The CMap data and correspondences were generated using data downloaded from the PGML website. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Klein 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
Klein 2004 |
[ Download Map Set Data ] |
| Accession ID: |
kl2004 |
[ View Map Set In Matrix ] |
| Species: |
Sorghum bicolor (Sorghum) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
17 November, 2004 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Mace 2009 |
[ Show Only This Set ] |
| Abbreviated Name: |
Mace 2009 |
[ Download Map Set Data ] |
| Accession ID: |
mac2010a |
[ View Map Set In Matrix ] |
| Species: |
Sorghum bicolor (Sorghum) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
26 January, 2009 |
|
|
Description:
|
BMC Plant Biology 2009, 9:13 doi:10.1186/1471-2229-9-13 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Okada 2010 |
[ Show Only This Set ] |
| Abbreviated Name: |
Okada 2010 |
[ Download Map Set Data ] |
| Accession ID: |
oka2010a |
[ View Map Set In Matrix ] |
| Species: |
Panicum virgatum (Switchgrass) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
20 April, 2010 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Composite 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
Composite 2004 |
[ Download Map Set Data ] |
| Accession ID: |
apr2004a |
[ View Map Set In Matrix ] |
| Species: |
Triticum aestivum (Wheat) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
01 May, 2004 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Consensus SSR 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
Consensus SSR 2004 |
[ Download Map Set Data ] |
| Accession ID: |
sod2004a |
[ View Map Set In Matrix ] |
| Species: |
Triticum aestivum (Wheat) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
01 October, 2004 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Wheat genes - 1993 |
[ Show Only This Set ] |
| Abbreviated Name: |
Wheat genes - 1993 |
[ Download Map Set Data ] |
| Accession ID: |
hag1993a |
[ View Map Set In Matrix ] |
| Species: |
Triticum aestivum (Wheat) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
01 January, 1993 |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
| Map Set Name: |
Cornell Synthetic/Opata 1995 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell Synthetic/Opata 1995 |
[ Download Map Set Data ] |
| Accession ID: |
cu-sxo-1995 |
[ View Map Set In Matrix ] |
| Species: |
Triticum aestivum (Wheat) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
|
| Published On: |
31 December, 1995 |
|
|
Description:
|
This map was constructed using 114 RI (F7) lines, derived by single-seed descent, from the mating of the synthetic line Altar84/Ae. squarrosa with Opata M 85. The map was constructed with Mapmaker version 2.0. For the maps of homoeologous groups 2 and 3 a LOD threshold of 2.0 was required for placement on the framework; for the other groups a LOD of 3.0 was required. Markers with lower LOD values were assigned to intervals.
ERRATA: Subsequent data from J.C. Nelson based on Chinese Spring nullitetrasomic stocks has moved several of the markers at the ends of 2AS, 3AL and 4AL to other chromosomes. From 2AS, loci from Xbcd348.1 to Xcdo447 are moved to the end of 2BS. From 3AL, loci from Xabc172.2 to Xbcd451 are moved to the end of 3DS. From 4AL,loci from Xbcd129 to Xbcd1975 are moved to the end of 7DS. For a map reflecting these changes see Map_Data '
Wheat, Synthetic x Opata, SSR' in GrainGenes. |
|
| Maps: |
|
| |
[ Display All Maps in Viewer ]
|
| Cross-references: |
|
|
| |
![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial 
