Current Release TAIR 8

Annotation

TAIR release 8 of the Arabidopsis thaliana genome

 

• The TAIR data were imported into an Ensembl schema database by the Nottingham Arabidopsis Stock Centre (NASC).
• Putative orthologs between arabidopsis, japonica rice, indica rice, glaberrima, Sorghum, Grape, Poplar, and maize gene models were generated using Ensembl's compara pipeline.
• Whole genome alignments between Grape and Arabidopsis, Poplar and arabidopsis were generated by Ensembl's blastz-chain-net pipeline

Entry Points

Browse by Chromosome

Lookup a Chromosome Location

Example Features

	Gene:	AT4G03840-TAIR-G
	Transcript:	AT4G03840.1-TAIR
	Contig:	T7I23_1

Statistics

Assembly:	TAIR8, Apr 2008
Genebuild:	TAIR8, Apr 2008
Known protein-coding genes:	22,992
Novel protein-coding genes:	8,143
Pseudogenes:	859
RNA genes:	1,288
Base Pairs:	135,709,388
Golden Path Length:	119,707,899
Most common InterPro domains:	Top 40 Top 500

How the statistics are calculated