grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps IXa-m
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: IXa-m
Map Start: 0 cM
Map Stop: 128.32 cM
Features by Type:
13 SSR
55 STS
68 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 68.       of 3 | Next
Switchgrass - Okada 2010 - IXa-m
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2260_531 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050330 Gene Prediction 73,316,137 - 73,320,788 () related_sequence View Maps
sww2654_285 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050030 Gene Prediction 72,994,605 - 72,995,864 () related_sequence View Maps
sww2654_308 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050030 Gene Prediction 72,994,605 - 72,995,864 () related_sequence View Maps
sww2262_237 STS 6.98 No other positions
sww2524_187 STS 19.55 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g041700 Gene Prediction 64,968,749 - 64,971,371 () related_sequence View Maps
sww2022_417 STS 24.52 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g011100 Gene Prediction 15,560,910 - 15,584,253 () related_sequence View Maps
sww50_194 STS 29.13 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g029500 Gene Prediction 59,294,304 - 59,297,640 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g037680 Gene Prediction 67,259,001 - 67,262,063 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g009630 Gene Prediction 12,172,185 - 12,175,232 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000230 Gene Prediction 66,882 - 73,024 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g005900 Gene Prediction 8,272,871 - 8,276,740 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g033050 Gene Prediction 56,110,774 - 56,118,012 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g007640 Gene Prediction 12,029,334 - 12,034,799 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g041090 Gene Prediction 68,637,703 - 68,640,661 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g010430 Gene Prediction 12,910,331 - 12,913,085 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g026930 Gene Prediction 62,160,861 - 62,165,515 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g001390 Gene Prediction 1,143,655 - 1,146,292 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g003820 Gene Prediction 4,310,923 - 4,317,677 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g021620 Gene Prediction 50,725,428 - 50,725,760 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g028340 Gene Prediction 56,124,118 - 56,128,760 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g023130 Gene Prediction 51,502,738 - 51,509,621 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g038680 Gene Prediction 72,889,972 - 72,893,285 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 8 Sb08g004470 Gene Prediction 5,349,758 - 5,379,686 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g023450 Gene Prediction 58,375,798 - 58,379,208 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g008390 Gene Prediction 11,129,444 - 11,131,045 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026140 Gene Prediction 52,658,924 - 52,664,460 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g001440 Gene Prediction 1,333,771 - 1,337,497 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g040350 Gene Prediction 74,317,593 - 74,320,703 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g029030 Gene Prediction 59,059,319 - 59,063,771 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g036050 Gene Prediction 64,063,875 - 64,070,162 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g039320 Gene Prediction 62,752,670 - 62,755,545 () related_sequence View Maps
sww50_204 STS 29.13 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g029500 Gene Prediction 59,294,304 - 59,297,640 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g037680 Gene Prediction 67,259,001 - 67,262,063 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g009630 Gene Prediction 12,172,185 - 12,175,232 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000230 Gene Prediction 66,882 - 73,024 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g005900 Gene Prediction 8,272,871 - 8,276,740 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g033050 Gene Prediction 56,110,774 - 56,118,012 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g007640 Gene Prediction 12,029,334 - 12,034,799 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g041090 Gene Prediction 68,637,703 - 68,640,661 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g010430 Gene Prediction 12,910,331 - 12,913,085 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g026930 Gene Prediction 62,160,861 - 62,165,515 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g001390 Gene Prediction 1,143,655 - 1,146,292 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g003820 Gene Prediction 4,310,923 - 4,317,677 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g021620 Gene Prediction 50,725,428 - 50,725,760 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g028340 Gene Prediction 56,124,118 - 56,128,760 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g023130 Gene Prediction 51,502,738 - 51,509,621 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g038680 Gene Prediction 72,889,972 - 72,893,285 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 8 Sb08g004470 Gene Prediction 5,349,758 - 5,379,686 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g023450 Gene Prediction 58,375,798 - 58,379,208 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026140 Gene Prediction 52,658,924 - 52,664,460 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g008390 Gene Prediction 11,129,444 - 11,131,045 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g040350 Gene Prediction 74,317,593 - 74,320,703 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g001440 Gene Prediction 1,333,771 - 1,337,497 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g029030 Gene Prediction 59,059,319 - 59,063,771 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g036050 Gene Prediction 64,063,875 - 64,070,162 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g039320 Gene Prediction 62,752,670 - 62,755,545 () related_sequence View Maps
sww737_258 STS 35.21 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g036740 Gene Prediction 60,346,941 - 60,350,979 () related_sequence View Maps
sww2175_211 STS 50.48 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g004820 Gene Prediction 4,272,654 - 4,277,366 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g020650 Gene Prediction 50,063,251 - 50,064,795 () related_sequence View Maps
sww2175_217 STS 50.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g004820 Gene Prediction 4,272,654 - 4,277,366 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g020650 Gene Prediction 50,063,251 - 50,064,795 () related_sequence View Maps
sww1523_212 STS 52.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g002920 Gene Prediction 2,551,919 - 2,557,296 () related_sequence View Maps
sww1523_215 STS 52.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g002920 Gene Prediction 2,551,919 - 2,557,296 () related_sequence View Maps
sww968_543 STS 63.76 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g029750 Gene Prediction 51,851,170 - 51,856,525 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050250 Gene Prediction 73,230,423 - 73,235,266 () related_sequence View Maps
sww2221_325 STS 69.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g019720 Gene Prediction 21,545,022 - 21,549,033 () related_sequence View Maps
sww2331_174 STS 69.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g019720 Gene Prediction 21,545,022 - 21,549,033 () related_sequence View Maps
sww2295_546 STS 75.59 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g037460 Gene Prediction 65,391,595 - 65,394,474 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g027870 Gene Prediction 57,755,902 - 57,768,505 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g021010 Gene Prediction 49,213,175 - 49,217,382 () related_sequence View Maps
sww554_129 STS 78.28 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g015200 Gene Prediction 14,700,886 - 14,707,861 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g024430 Gene Prediction 53,502,207 - 53,504,915 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g009240 Gene Prediction 9,965,123 - 9,972,667 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g018420 Gene Prediction 46,038,022 - 46,039,089 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g018430 Gene Prediction 19,171,664 - 19,172,991 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g025540 Gene Prediction 55,283,354 - 55,292,107 () related_sequence View Maps
sww2168_258 STS 80.6 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g017040 Gene Prediction 17,255,207 - 17,256,250 () related_sequence View Maps
sww2369_228 STS 94.04 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g013000 Gene Prediction 12,028,506 - 12,029,337 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g038310 Gene Prediction 66,242,562 - 66,244,247 () related_sequence View Maps
sww2647_288 STS 99.04 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g011740 Gene Prediction 10,623,060 - 10,626,499 () related_sequence View Maps
sww2292_246 STS 113.56 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g007600 Gene Prediction 6,544,420 - 6,545,981 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g007610 Gene Prediction 6,546,946 - 6,548,439 () related_sequence View Maps
sww2274_216 STS 125.25 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g002260 Gene Prediction 1,882,523 - 1,887,117 () related_sequence View Maps
sww2260_531 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050330 Gene Prediction 73,316,137 - 73,320,788 () related_sequence View Maps
sww2654_285 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g050030 Gene Prediction 72,994,605 - 72,995,864 () related_sequence View Maps