Current Release OMAP Short Arm
Assembly
A minimum tile of BAC clones, from the short arm of chr 3, were
selected from the Heavily Manually Edited (HME) physical map of
O. glabberima. BAC clones were sequenced, by subcloning into shotgun
vector and using Sanger methods, to 8x coverage and phase II
finishing. Assembly of the tile sequence was done manually.
Annotation
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The location and structure of protein coding genes have been
predicted using the Gramene evidence-based gene prediction
pipleine. Genes have been further annotated with functional domains
and GO annotations.
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Various plant nucleotide sequences have been mapped to the genome,
the mapped features can be viewed in contigview
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Putative orthologs/paralogs between the predicted genes and those in
several other eukaryotic specues have been estimated.
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