About Oryza brachyantha
Oryza brachyantha is a distant relative of cultivated rice. It is placed on the basal lineage of Oryza and is the only member of the genus assigned to the F genome type. An annual or weekly perennial tufted grass, it is distributed in west and central Africa, and grows in open wetland habitats. It has potentially useful traits for rice breeding, including resistance/tolerance to yellow stem borer, leaffolder, whorl maggot and bacterial blight. The O. brachyantha reference sequence will provide an important resource for functional and evolutionary studies in the genus Oryza. Its nuclear genome is diploid (2n = 24) and ~362 Mb.
These pre-publication data are being released under guidelines of the Fort Lauderdale Agreement, which reaffirms the balance between fair use (i.e. no pre-emptive publication) and early disclosure. Users are encouraged use these data to advance their research on individual loci but are asked to respect the rights of the investigators who generated these data to publish the whole-genome level description of the O. brachyantha in a peer-reviewed journal. This description includes whole-genome comparative analyses, genome size evolution, gene family evolution, gene organization and movement, heterochromatin, centromere evolution. For inquiries and information on how to cite these data please contact Dr. Mingsheng Chen or Dr. Rod Wing.
Genome assembly: Oryza_brachyantha.v1.4b
Download DNA sequence (FASTA)
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes AnnotationAdditional annotations generated by the Gramene/Ensembl Genomes projects include:
- The standard set of Gramene analyses detailed here.