Oryza sativa Indica Group
Oryza sativa Indica Group
About Oryza sativa Indica Group
Of the two most commonly cultivated sub-species of rice, varieties of the Indica Group are the most widely grown in the hot climates of Southern Asia. The other sub-species, Japonica, is generally restricted to temperate climes such as Japan. The genome of O. sativa Indica Group is very similar to that presented on the main O. sativa genome browser.
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Regulation
What can I find? Microarray annotations.
More about regulation in Oryza sativa Indica Group
More about the Ensembl Plants microarray annotation strategy
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Update your old Ensembl IDs
Variation
What can I find? Short sequence variants.
More about variation in Oryza sativa Indica Group
More about variation in Ensembl Plants
Download all variants (GVF)
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene/Ensembl Genomes projects include:- The standard set of Gramene analyses detailed here.