Oryza rufipogon

Taxonomy ID 4529

About Oryza rufipogon

Oryza rufipogon (BBCC genome type) is a wild rice, perennial, tufted, and scrambling grass with nodal tillering; plant height variable (1-5 m) depending on the depth of water; panicles open; spikelets usually 4.5-10.6 mm long and 1.6-3.5 mm wide with awns usually 4-10 cm long; anthers >3 mm reaching 7.4 mm long.

More information and statistics

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins (FASTA)

Update your old Ensembl IDs

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

Gramene/Ensembl Genomes Annotation

Additional annotations generated by the Gramene project include:

  • The 'base' data from the FPC map file consists of the locations of FPContigs on chromosomes, and clones on FPContigs. These data form the basis of the genome browser views.
  • In addition to the 'base' data, syntenic spans between O.rufipogon and O.sativa were estimated using the procedure outlined [here]
  • A summary of the data available from within the genome browser can be viewed [here]