About Oryza rufipogon
Oryza rufipogon (BBCC genome type) is a wild rice, perennial, tufted, and scrambling grass with nodal tillering; plant height variable (1-5 m) depending on the depth of water; panicles open; spikelets usually 4.5-10.6 mm long and 1.6-3.5 mm wide with awns usually 4-10 cm long; anthers >3 mm reaching 7.4 mm long.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene project include:
- The 'base' data from the FPC map file consists of the locations of FPContigs on chromosomes, and clones on FPContigs. These data form the basis of the genome browser views.
- In addition to the 'base' data, syntenic spans between O.rufipogon and O.sativa were estimated using the procedure outlined [here]
- A summary of the data available from within the genome browser can be viewed [here]