Gramene database build 47 released

The Gramene Team is pleased to announce its release #47 featuring the new Plant Reactome, we are providing version 3 of the Reactome software platform. Notable new features include:

  • Data analysis tools

    • Diagram overlay visualization of gene lists, Uniprot IDs, compound identifiers, and/or -omics expression data

    • Inter-species pathway comparison

  • Advanced search features built on the Apache Solr platform

Aug 2015 Webinar: Plant Reactome Analysis Tools

Tuesday, August 18, 2015 11:00:00 AM PDT - 11:30:00 AM PDT

This session will showcase the pathway analysis tools provided with the latest version of the Plant Reactome web site and database ( Learn how to upload and visualize genomic, transcriptomic, and metabolic data on pathway diagrams, extract related statistics, and compare pathway-level homology between rice and other species.

CSHL servers network maintenance on Aug. 7, 2015 at 12-12:30 am EDT

CSHL Information Technology will be performing some network maintenance on the early morning of Friday, August 7th. The maintenance will interrupt network access to Gramene's servers, affecting local and Internet access to the machines.

UPDATE: The work will be performed between 12:00 - 12:30 AM EDT.

Please plan accordingly. We apologize for the inconvenience.

The Gramene Team

Gramene at ASPB's Plant Biology Conference 2015

Are you ready for this year's Plant Biology Conference?

Gramene will be participating at ASPB's most anticipated annual meeting with the following events:

Webinar: Arabidopsis Data & Resources in Gramene on Tues, July 14, 2015 @ 2:00 pm EDT

Gramene Webinar on Arabidopsis Data & Resources in the Gramene Database

Tuesday, July 14, 2015 @ 2:00 PM EDT

Gramene database build 46 released

The Gramene Team is pleased to announce its release #46. In collaboration with Ensembl Plants we are providing in this release:

  • Updated assembly for tomato to v2.50

  • New variation data from the Wheat HapMap and and updated genotypes from CerealsDB

  • New probe data for barley

  • Updated whole genome alignments for Solanum lycopersicum vs Arabidopsis thaliana, Oryza sativa Japonica, and Vitis vinifera

Fascination of Plants Day 2015

Fascination of Plants Day (FoPD) was celebrated around the World on May 18th of 2015

To celebrate FoPD in New York, members of the Ware Lab (Cold Spring Harbor Laboratory) brought a little amazement to the young and bright minds of kindergarteners at Bayville Primary School, as well as to a number of children from various elementary schools in the Locust Valley area who are members of the Grenville Baker Boys and Girls Club's Science Club.


Check out that Venus Flytrap on the little table!

WISP course on Wheat Genetics, Nov 23-26 at the John Innes Centre

WISP course on Wheat Genetics John Innes Centre, Norwich, UK

23-26 November 2015

Webinar: Rice Data & Resources in Gramene on Tues, May 19, 2015 @ 2:00 pm EDT

Gramene Webinar on Rice Data & Resources in the Gramene Database

Fascination of Plants Day is here... Come celebrate it with Gramene!

Tuesday, May 19, 2015 @ 2:00 PM EDT

Learn the benefits of using Gramene to accelerate your research goals. During this webinar, we will demo the use of Gramene's comparative genomics visualization and analysis resources through practical examples of general interest to rice researchers.

NSF Funds Planteome Project

The National Science Foundation (NSF) has funded the Planteome Project to develop common reference ontologies and applications for plant biology.


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