About Oryza nivara
Oryza nivara (AA genome type) is a wild rice, annual, short to intermediate height (usually <2 m) grass; panicles usually compact, rarely open; spikelets large, 6-10.4 mm long and 1.9-3.4 mm wide, with strong awn (4-10 cm long); anthers 1.5-3 mm long.
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Update your old Ensembl IDsComparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene project include:
- Gene phylogenetic trees with other Oryza speices and outgroup species: Leersia perrieri, Brachypodium distachyon, Arabidopsis thaliana and Arabidopsis thaliana, see example .
- Blastz Whole Genome Alignment to Oryza sativa Japonica (MSU6), see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features from MIPS and AGI repeat libraries