Oryza nivara
Oryza nivara
About Oryza nivara
Oryza nivara (AA genome type) is a wild rice, annual, short to intermediate height (usually <2 m) grass; panicles usually compact, rarely open; spikelets large, 6-10.4 mm long and 1.9-3.4 mm wide, with strong awn (4-10 cm long); anthers 1.5-3 mm long.
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analysis
Download alignments (EMF)
Gene annotation
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Update your old Ensembl IDsVariation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes Annotation
Additional annotations generated by the Gramene project include:
- Gene phylogenetic trees with other Oryza speices and outgroup species: Leersia perrieri, Brachypodium distachyon, Arabidopsis thaliana and Arabidopsis thaliana, see example .
- Blastz Whole Genome Alignment to Oryza sativa Japonica (MSU6), see example.
- Mapping to the genome of multiple sequence-based feature sets using gramene blat pipeline, see example.
- Identification of various repeat features from MIPS and AGI repeat libraries