About Populus trichocarpa
Populus trichocarpa (poplar) is a deciduous broadleaf tree that is native to Western North America. It is an economically important source of timber. Its rapid growth and compact genome size (~500 Mbp, n=18) has lead to its use as a model organism for tree species.
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
Download alignments (EMF)
What can I find? Microarray annotations.
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Gramene/Ensembl Genomes AnnotationAdditional annotations generated by the Gramene/Ensembl Genomes projects include:
- The standard set of Gramene analyses detailed here.