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Find in Genomes
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Enter the Query Sequence
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Paste sequences (max 10) in FASTA or plain text:
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Upload a file containing one or more FASTA sequences
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Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
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Select the databases to search against
Select species:
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Aegilops
Arabidopsis
Avena
Barley
Maize
Millet
Poaceae
Rice
Rice_alta
Rice_australiensis
Rice_brachyantha
Rice_glaberrima
Rice_indica
Rice_nivara
Rice_punctata
Rice_rufipogon
Secale
Sorghum
Sugarcane
Wheat
dna database
BAC ends (dbGSS)
BACs (GenBank)
CDSs (GenBank)
EST Clusters (Cornsensus)
EST Clusters (PlantGDB PUTs)
EST Clusters (Pratt)
EST Clusters (Rice GD)
EST Clusters (TIGR Gene Indices)
ESTs (dbEST)
Exemplar Sequences (GeneChip)
FST Inserts (Ds)
FST Inserts (IS)
FST Inserts (Mu)
FST Inserts (T-DNA)
FST Inserts (Tos17)
GSS Clusters HighCot
GSS Clusters Meth-Filt+High-Cot
GSS HighCot (Bennetzen)
GSS MethFilt (CSHL)
GSS MethFilt (Orion)
GSS Reads (Klein)
Genomic sequence
Genomic sequence (masked)
Markers (RFLP)
Markers (general)
cDNAs (FGENESH gene models)
cDNAs (FGENESH gene models)
cDNAs (GenBank)
cDNAs (KOME)
cDNAs (TIGR gene models)
peptide database
Peptides (Fgenesh gene models)
Peptides (Fgenesh gene models)
Peptides (TIGR gene models)
UniProtKB (SPTr) Peptides
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation