• Home

Gramene Proteins Database

Find:

E.g., P93436, alcohol, indica, or view Help

The Protein Database at Gramene provides collective information on Swissprot-Trembl protein entries from family Poaceae (Grasses). 

The protein entries are annotated by associating the following three concepts of Gene Ontology (GO) .

• Molecular function of the gene product (protein).
• Biological process in which the gene product (protein) is involved .
• Cellular component where the gene product (protein) is localized.

These associations assigned are based on annotations described either in the published reports or generated by in-silico experiments. Each association is supported with an evidence (reference) and the evidence code (experiment type). To learn more on the ontologies please visit the ontology section of Gramene.

Proteins Search or Browse Options

Home Page:	Introduction and Quick search - Search the Proteins database by keyword - protein name / gene name / species / cultivar/ SWISSPROT accession number / SPTrEMBL ID / Protein Sequence Identifier (Protein_ID) / Genbank GI number. Use the symbol * for wild card search (e.g. flower* for "flower", "flowers", and "flowering").
Advanced Search:	Your keyword search can be restricted to any one field and/or species.
By Pfam or PROSITE	Search protein family term or ID, such as e.g. PF00281 ,  Ribosomal_L5 ,  PS50255 ,  CYTOCHROME_B5_2
Browse by GO Slim	Search via Gene Ontology terms Browse by Molecular Function catalytic activity (enzyme) enzyme regulator signal transducer antioxidant activity structural molecule activity transporter transcription regulator translation regulator DNA binding RNA binding nucleotide binding Browse by Biological Process amino acid metabolism carbohydrate metabolism lipid metabolism nucleic acid metabolism protein metabolism cell cycle cell organization cell communication stress response transport electron transprot photosynthesis energy pathway Browse by Cellular Component nucleus mitochondria plastid endoplasmic reticulum cytosol ribosome chromosome cytoskeleton membrane

Help

Help	Presents an overview on how to use the Proteins database and lists explanations of field names.
Tutorial	More in-depth than the help pages, use the tutorial for an exaple of using the database, see how it integrates other datasets, and get tips to increase your data search efficiency.
FAQ	Frequently Asked Questions - see what questions users have asked, and get the developers answers.
Evidence codes
Gene ontology (GO) associations	Associations are based on Gramene curation.
Cellular localization predictions	Predotar and TargetP were used to predict localization to plastid, mitochondria and secretory vesiclular localization. The method used is described in Gramene reference 7047. TMHMM (v. 2.0) was used to predict Transmembrane localization. The method used is described in Gramene reference 7047
Release Notes	For more information about the most recent release.

Acknowledgements

For a list of data contributors, please see Collaborators and Contributors.

• Cite Gramene
• Feedback
• About
• Site Map
• Home

 

SPECIES: