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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
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Correspondences
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Maps VIb-f
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: VIb-f
Map Start: 0 cM
Map Stop: 47.35 cM
Features by Type:
2 SSR
27 STS
29 Total

Map Features

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Items 1 to 25 of 29.       of 2 | Next
Switchgrass - Okada 2010 - VIb-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww1926_220 STS 44.24 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g026520 Gene Prediction 61,665,164 - 61,666,734 () related_sequence View Maps
sww3033_180 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww3033_186 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww381_217 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww381_219 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww2284_202 STS 6.13 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g001130 Gene Prediction 1,101,094 - 1,106,395 () related_sequence View Maps
sww2580_204 STS 2.19 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g000625 Gene Prediction 448,614 - 448,937 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g018170 Gene Prediction 18,874,567 - 18,874,848 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g009730 Gene Prediction 8,502,005 - 8,503,090 () related_sequence View Maps
sww1889_222 STS 0 No other positions
sww3026_160 STS 47.35 No other positions
sww47_249 STS 45.55 No other positions
sww1926_220 STS 44.24 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g026520 Gene Prediction 61,665,164 - 61,666,734 () related_sequence View Maps
sww1573_225 STS 33.07 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g022240 Gene Prediction 56,673,459 - 56,675,165 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g025640 Gene Prediction 60,605,341 - 60,606,234 () related_sequence View Maps
sww1549_210 STS 27.37 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g022240 Gene Prediction 56,673,459 - 56,675,165 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g025640 Gene Prediction 60,605,341 - 60,606,234 () related_sequence View Maps
nfsg057_121 SSR 23.56 No other positions
nfsg057_126 SSR 23.56 No other positions
sww3043_168 STS 21.48 No other positions
sww3043_170 STS 21.48 No other positions
sww2180_359 STS 19.85 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003440 Gene Prediction 4,139,923 - 4,142,365 () related_sequence View Maps
sww3046_178 STS 19.85 No other positions
sww3046_182 STS 19.85 No other positions
sww3033_180 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww3033_186 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww381_217 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww381_219 STS 18.27 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g002950 Gene Prediction 3,115,804 - 3,117,304 () related_sequence View Maps
sww3039_165 STS 16 No other positions