grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ib-m
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: Ib-m
Map Start: 0 cM
Map Stop: 107.4 cM
Features by Type:
5 SSR
48 STS
53 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 53.       of 3 | Next
Switchgrass - Okada 2010 - Ib-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2489_203 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000780 Gene Prediction 599,058 - 602,341 () related_sequence View Maps
sww2489_205 STS 2.72 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000780 Gene Prediction 599,058 - 602,341 () related_sequence View Maps
sww2405_189 STS 19.16 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004243 Gene Prediction 4,039,138 - 4,039,395 () related_sequence View Maps
sww2319_246 STS 35.43 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g010670 Gene Prediction 14,949,487 - 14,956,661 () related_sequence View Maps
sww2659_268 STS 36.22 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g010670 Gene Prediction 14,949,487 - 14,956,661 () related_sequence View Maps
sww2290_349 STS 62.2 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g025260 Gene Prediction 55,082,779 - 55,088,771 () related_sequence View Maps
sww2290_363 STS 62.2 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g025260 Gene Prediction 55,082,779 - 55,088,771 () related_sequence View Maps
sww2356_239 STS 68.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g033456 Gene Prediction 63,378,961 - 63,382,091 () related_sequence View Maps
sww2356_243 STS 68.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g033456 Gene Prediction 63,378,961 - 63,382,091 () related_sequence View Maps
sww975_372 STS 77.02 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g030950 Gene Prediction 60,953,978 - 60,956,415 () related_sequence View Maps
sww2970_156 STS 77.79 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g031010 Gene Prediction 60,986,394 - 60,990,571 () related_sequence View Maps
sww1621_233 STS 80.02 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g029830 Gene Prediction 58,388,342 - 58,388,765 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g043910 Gene Prediction 67,023,422 - 67,025,072 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g029930 Gene Prediction 60,004,151 - 60,004,492 () related_sequence View Maps
sww177_220 STS 82.65 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g028520 Gene Prediction 58,583,750 - 58,587,486 () related_sequence View Maps
sww2596_379 STS 83.5 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g028290 Gene Prediction 58,367,690 - 58,373,544 () related_sequence View Maps
sww2596_397 STS 83.5 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g028290 Gene Prediction 58,367,690 - 58,373,544 () related_sequence View Maps
sww2959_121 STS 90.78 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035720 Gene Prediction 65,611,429 - 65,614,769 () related_sequence View Maps
sww2964_125 STS 93.41 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035720 Gene Prediction 65,611,429 - 65,614,769 () related_sequence View Maps
sww2964_134 STS 94.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035720 Gene Prediction 65,611,429 - 65,614,769 () related_sequence View Maps
sww2959_131 STS 94.79 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035720 Gene Prediction 65,611,429 - 65,614,769 () related_sequence View Maps
sww1948_210 STS 95.97 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g012110 Gene Prediction 17,936,918 - 17,937,676 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g036070 Gene Prediction 65,849,006 - 65,850,590 () related_sequence View Maps
sww1598_216 STS 102.83 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g038290 Gene Prediction 67,740,518 - 67,741,488 () related_sequence View Maps
sww2489_203 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000780 Gene Prediction 599,058 - 602,341 () related_sequence View Maps
sww2489_205 STS 2.72 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g000780 Gene Prediction 599,058 - 602,341 () related_sequence View Maps
sww196_252 STS 15.66 No other positions
sww2405_189 STS 19.16 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004243 Gene Prediction 4,039,138 - 4,039,395 () related_sequence View Maps