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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
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Correspondences
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Maps IXb-f
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
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Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: IXb-f
Map Start: 0 cM
Map Stop: 129.32 cM
Features by Type:
21 SSR
33 STS
54 Total

Map Features

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Items 1 to 25 of 54.       of 3 | Next
Switchgrass - Okada 2010 - IXb-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww341_151 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g049740 Gene Prediction 72,688,705 - 72,692,155 () related_sequence View Maps
sww2144_411 STS 27.17 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g001035 Gene Prediction 1,041,013 - 1,041,270 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g000940 Gene Prediction 879,883 - 881,239 () related_sequence View Maps
sww620_281 STS 30.14 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g049280 Gene Prediction 72,293,239 - 72,295,972 () related_sequence View Maps
sww391_262 STS 43.22 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g045180 Gene Prediction 68,342,385 - 68,343,953 () related_sequence View Maps
sww2524_191 STS 50.76 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g041700 Gene Prediction 64,968,749 - 64,971,371 () related_sequence View Maps
sww2403_222 STS 60.53 No other positions
sww2446_226 STS 60.53 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g038150 Gene Prediction 61,717,614 - 61,718,910 () related_sequence View Maps
sww2446_230 STS 60.53 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g038150 Gene Prediction 61,717,614 - 61,718,910 () related_sequence View Maps
sww59_209 STS 80.03 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g028230 Gene Prediction 49,234,471 - 49,237,082 () related_sequence View Maps
sww59_221 STS 80.88 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g028230 Gene Prediction 49,234,471 - 49,237,082 () related_sequence View Maps
sww2221_344 STS 86.59 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g019720 Gene Prediction 21,545,022 - 21,549,033 () related_sequence View Maps
sww2377_283 STS 86.59 No other positions
sww2528_357 STS 104.52 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g013000 Gene Prediction 12,028,506 - 12,029,337 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g009300 Gene Prediction 13,320,509 - 13,321,404 () related_sequence View Maps
sww2528_358 STS 104.52 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g013000 Gene Prediction 12,028,506 - 12,029,337 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g009300 Gene Prediction 13,320,509 - 13,321,404 () related_sequence View Maps
sww2274_224 STS 129.32 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g002260 Gene Prediction 1,882,523 - 1,887,117 () related_sequence View Maps
sww341_151 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g049740 Gene Prediction 72,688,705 - 72,692,155 () related_sequence View Maps
nfsg005_256 SSR 27.17 No other positions
nfsg005_270 SSR 27.17 No other positions
sww2144_411 STS 27.17 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g001035 Gene Prediction 1,041,013 - 1,041,270 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g000940 Gene Prediction 879,883 - 881,239 () related_sequence View Maps
sww620_281 STS 30.14 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g049280 Gene Prediction 72,293,239 - 72,295,972 () related_sequence View Maps
nfsg139_162 SSR 32.39 No other positions
nfsg139_164 SSR 32.39 No other positions
nfsg002_171 SSR 36.5 No other positions
nfsg002_185 SSR 36.76 No other positions
sww2527_203 STS 37.79 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g046370 Gene Prediction 69,562,053 - 69,564,618 () related_sequence View Maps