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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VIIIb-f
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: VIIIb-f
Map Start: 0 cM
Map Stop: 59.91 cM
Features by Type:
4 SSR
14 STS
18 Total

Map Features

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Items 1 to 18 of 18.
Switchgrass - Okada 2010 - VIIIb-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2656_198 STS 1.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022850 Gene Prediction 55,151,420 - 55,154,153 () related_sequence View Maps
sww2135_375 STS 25.76 No other positions
sww2980_166 STS 59.91 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g027480 Gene Prediction 61,868,780 - 61,869,562 () related_sequence View Maps
sww2980_180 STS 59.91 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g027480 Gene Prediction 61,868,780 - 61,869,562 () related_sequence View Maps
sww2308_340 STS 0 No other positions
sww2656_198 STS 1.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022850 Gene Prediction 55,151,420 - 55,154,153 () related_sequence View Maps
nfsg034_160 SSR 3.73 No other positions
nfsg034_166 SSR 3.73 No other positions
sww271_263 STS 14.77 No other positions
sww271_255 STS 15.49 No other positions
sww539_257 STS 23.33 No other positions
sww2135_375 STS 25.76 No other positions
nfsg066_219 SSR 38.14 No other positions
nfsg066_225 SSR 38.14 No other positions
sww2980_166 STS 59.91 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g027480 Gene Prediction 61,868,780 - 61,869,562 () related_sequence View Maps
sww2980_180 STS 59.91 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g027480 Gene Prediction 61,868,780 - 61,869,562 () related_sequence View Maps
sww2985_166 STS 59.91 No other positions
sww2985_180 STS 59.91 No other positions