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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Va-m
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: Va-m
Map Start: 0 cM
Map Stop: 127.39 cM
Features by Type:
15 SSR
45 STS
60 Total

Map Features

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Items 1 to 25 of 60.       of 3 | Next
Switchgrass - Okada 2010 - Va-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2402_214 STS 20.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww2402_245 STS 20.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww3016_129 STS 20.88 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031060 Gene Prediction 59,441,882 - 59,445,806 () related_sequence View Maps
sww1892_220 STS 26 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006280 Gene Prediction 6,409,114 - 6,412,035 () related_sequence View Maps
sww2338_153 STS 30.97 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006930 Gene Prediction 7,155,157 - 7,156,351 () related_sequence View Maps
sww88_169 STS 38.5 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps
sww88_195 STS 38.5 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps
sww2437_237 STS 57.64 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g019560 Gene Prediction 47,989,290 - 47,993,794 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g021600 Gene Prediction 50,674,190 - 50,679,216 () related_sequence View Maps
sww1674_208 STS 65.08 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026210 Gene Prediction 52,703,438 - 52,705,203 () related_sequence View Maps
sww1674_214 STS 65.08 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026210 Gene Prediction 52,703,438 - 52,705,203 () related_sequence View Maps
sww2517_264 STS 94.84 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g036950 Gene Prediction 64,979,656 - 64,980,012 () related_sequence View Maps
sww2132_216 STS 110.74 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g043690 Gene Prediction 70,957,172 - 70,960,283 () related_sequence View Maps
sww2132_219 STS 110.74 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g043690 Gene Prediction 70,957,172 - 70,960,283 () related_sequence View Maps
sww2306_298 STS 121.63 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g047040 Gene Prediction 74,013,522 - 74,016,143 () related_sequence View Maps
sww2428_424 STS 121.63 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g046510 Gene Prediction 73,614,184 - 73,616,101 () related_sequence View Maps
sww352_174 STS 124.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g013820 Gene Prediction 18,231,509 - 18,232,184 () related_sequence View Maps
sww194_174 STS 0 No other positions
nfsg171_228 SSR 13.48 No other positions
nfsg048_244 SSR 15.12 No other positions
nfsg048_228 SSR 15.97 No other positions
nfsg027_173 SSR 16.58 No other positions
sww2402_214 STS 20.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww2402_245 STS 20.1 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww3016_129 STS 20.88 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031060 Gene Prediction 59,441,882 - 59,445,806 () related_sequence View Maps
sww1892_220 STS 26 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006280 Gene Prediction 6,409,114 - 6,412,035 () related_sequence View Maps