grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps VIIa-f
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: VIIa-f
Map Start: 0 cM
Map Stop: 69.36 cM
Features by Type:
8 SSR
134 STS
142 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 142.       of 6 | Next
Switchgrass - Okada 2010 - VIIa-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2480_393 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g034110 Gene Prediction 62,006,823 - 62,009,436 () related_sequence View Maps
sww1718_305 STS 10.42 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g033690 Gene Prediction 61,613,899 - 61,615,636 () related_sequence View Maps
sww1718_311 STS 10.42 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g033690 Gene Prediction 61,613,899 - 61,615,636 () related_sequence View Maps
sww2480_401 STS 10.42 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g034110 Gene Prediction 62,006,823 - 62,009,436 () related_sequence View Maps
sww2864_185 STS 18.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031560 Gene Prediction 59,908,495 - 59,909,118 () related_sequence View Maps
sww2864_192 STS 18.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031560 Gene Prediction 59,908,495 - 59,909,118 () related_sequence View Maps
sww3017_145 STS 18.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031560 Gene Prediction 59,908,495 - 59,909,118 () related_sequence View Maps
sww3017_151 STS 18.29 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g031560 Gene Prediction 59,908,495 - 59,909,118 () related_sequence View Maps
sww2883_193 STS 19.74 No other positions
sww2887_193 STS 20.9 No other positions
sww2167_190 STS 22.02 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g029880 Gene Prediction 58,404,629 - 58,405,486 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g029860 Gene Prediction 58,394,254 - 58,394,810 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g029900 Gene Prediction 58,409,324 - 58,409,578 () related_sequence View Maps
sww2803_364 STS 23.99 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g028750 Gene Prediction 57,494,696 - 57,495,877 () related_sequence View Maps
sww2876_223 STS 25.13 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g028640 Gene Prediction 57,394,666 - 57,395,405 () related_sequence View Maps
sww2876_231 STS 25.13 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g028640 Gene Prediction 57,394,666 - 57,395,405 () related_sequence View Maps
sww3013_153 STS 26.98 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g028320 Gene Prediction 57,127,612 - 57,132,643 () related_sequence View Maps
sww3013_159 STS 26.98 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g028320 Gene Prediction 57,127,612 - 57,132,643 () related_sequence View Maps
sww1589_217 STS 32.51 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g027000 Gene Prediction 55,983,526 - 55,985,616 () related_sequence View Maps
sww2899_243 STS 32.51 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g026070 Gene Prediction 55,135,559 - 55,136,551 () related_sequence View Maps
sww2899_252 STS 32.51 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g026070 Gene Prediction 55,135,559 - 55,136,551 () related_sequence View Maps
sww2819_177 STS 42.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g022220 Gene Prediction 51,456,820 - 51,457,279 () related_sequence View Maps
sww2819_193 STS 42.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g022220 Gene Prediction 51,456,820 - 51,457,279 () related_sequence View Maps
sww2934_202 STS 42.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g022740 Gene Prediction 51,960,277 - 51,963,081 () related_sequence View Maps
sww3005_205 STS 42.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g022220 Gene Prediction 51,456,820 - 51,457,279 () related_sequence View Maps
sww3005_221 STS 45.57 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g022220 Gene Prediction 51,456,820 - 51,457,279 () related_sequence View Maps
sww2851_185 STS 48.45 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g020530 Gene Prediction 49,964,685 - 49,966,007 () related_sequence View Maps