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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
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Stack
Maps VIIIa-m
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: VIIIa-m
Map Start: 0 cM
Map Stop: 31.9 cM
Features by Type:
8 SSR
13 STS
21 Total

Map Features

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Items 1 to 21 of 21.
Switchgrass - Okada 2010 - VIIIa-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2443_225 STS 11.23 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022230 Gene Prediction 53,883,773 - 53,888,305 () related_sequence View Maps
sww2656_192 STS 11.23 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022850 Gene Prediction 55,151,420 - 55,154,153 () related_sequence View Maps
sww416_156 STS 12.16 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g018990 Gene Prediction 46,085,396 - 46,088,004 () related_sequence View Maps
sww2135_365 STS 18.63 No other positions
sww572_231 STS 27.54 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g026390 Gene Prediction 60,254,423 - 60,257,409 () related_sequence View Maps
sww123_206 STS 31.9 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g007340 Gene Prediction 7,631,964 - 7,633,884 () related_sequence View Maps
nfsg190_392 SSR 0 No other positions
nfsg190_390 SSR 2.49 No other positions
nfsg179_261 SSR 11.23 No other positions
nfsg215_150 SSR 11.23 No other positions
nfsg215_156 SSR 11.23 No other positions
nfsg277_125 SSR 11.23 No other positions
nfsg277_134 SSR 11.23 No other positions
sww2308_328 STS 11.23 No other positions
sww2443_225 STS 11.23 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022230 Gene Prediction 53,883,773 - 53,888,305 () related_sequence View Maps
sww2656_192 STS 11.23 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g022850 Gene Prediction 55,151,420 - 55,154,153 () related_sequence View Maps
sww416_156 STS 12.16 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g018990 Gene Prediction 46,085,396 - 46,088,004 () related_sequence View Maps
nfsg277_129 SSR 12.69 No other positions
sww2135_365 STS 18.63 No other positions
sww572_231 STS 27.54 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g026390 Gene Prediction 60,254,423 - 60,257,409 () related_sequence View Maps
sww123_206 STS 31.9 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g007340 Gene Prediction 7,631,964 - 7,633,884 () related_sequence View Maps