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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
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Correspondences
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Maps VIa-m
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: VIa-m
Map Start: 0 cM
Map Stop: 89.93 cM
Features by Type:
7 SSR
22 STS
29 Total

Map Features

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Items 1 to 25 of 29.       of 2 | Next
Switchgrass - Okada 2010 - VIa-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww3035_174 STS 75.14 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g026170 Gene Prediction 61,346,440 - 61,349,076 () related_sequence View Maps
sww2072_221 STS 53.9 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g028070 Gene Prediction 63,029,524 - 63,033,671 () related_sequence View Maps
sww842_200 STS 42.95 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g023340 Gene Prediction 58,239,037 - 58,240,533 () related_sequence View Maps
sww1813_168 STS 35 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g033930 Gene Prediction 61,841,393 - 61,845,200 () related_sequence View Maps
sww2342_217 STS 15.87 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g004390 Gene Prediction 5,566,016 - 5,569,735 () related_sequence View Maps
sww3034_185 STS 7.25 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003860 Gene Prediction 4,756,272 - 4,759,637 () related_sequence View Maps
sww3034_191 STS 7.25 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003860 Gene Prediction 4,756,272 - 4,759,637 () related_sequence View Maps
sww2180_344 STS 0.99 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003440 Gene Prediction 4,139,923 - 4,142,365 () related_sequence View Maps
sww2180_351 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003440 Gene Prediction 4,139,923 - 4,142,365 () related_sequence View Maps
nfsg239_250 SSR 89.93 No other positions
nfsg239_298 SSR 88.43 No other positions
nfsg145_214 SSR 86.2 No other positions
nfsg145_183 SSR 84.89 No other positions
sww3035_174 STS 75.14 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g026170 Gene Prediction 61,346,440 - 61,349,076 () related_sequence View Maps
sww2072_221 STS 53.9 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g028070 Gene Prediction 63,029,524 - 63,033,671 () related_sequence View Maps
sww842_200 STS 42.95 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g023340 Gene Prediction 58,239,037 - 58,240,533 () related_sequence View Maps
sww1813_168 STS 35 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g033930 Gene Prediction 61,841,393 - 61,845,200 () related_sequence View Maps
nfsg203_264 SSR 29.25 No other positions
nfsg265_149 SSR 29.25 No other positions
nfsg265_165 SSR 29.25 No other positions
sww1914_268 STS 29.25 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g006160 Gene Prediction 8,830,946 - 8,833,508 () related_sequence View Maps
sww3043_229 STS 29.25 No other positions
sww2342_217 STS 15.87 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g004390 Gene Prediction 5,566,016 - 5,569,735 () related_sequence View Maps
sww1729_203 STS 12.66 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g004110 Gene Prediction 5,176,905 - 5,184,149 () related_sequence View Maps
sww1729_201 STS 12.22 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g004110 Gene Prediction 5,176,905 - 5,184,149 () related_sequence View Maps