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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Switchgrass-Okada 2010
(Reference Set)
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Correspondences
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Maps Va-f
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
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Features:		 No Yes
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: Va-f
Map Start: 0 cM
Map Stop: 101.35 cM
Features by Type:
13 SSR
34 STS
47 Total

Map Features

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Items 1 to 25 of 47.       of 2 | Next
Switchgrass - Okada 2010 - Va-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2106_285 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g001540 Gene Prediction 1,398,834 - 1,402,445 () related_sequence View Maps
sww2402_208 STS 16.65 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww2402_232 STS 16.65 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww1892_206 STS 22.87 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006280 Gene Prediction 6,409,114 - 6,412,035 () related_sequence View Maps
sww2338_150 STS 24.86 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006930 Gene Prediction 7,155,157 - 7,156,351 () related_sequence View Maps
sww88_207 STS 31.15 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps
sww88_179 STS 32.49 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps
sww918_335 STS 41.33 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g025350 Gene Prediction 50,914,945 - 50,917,707 () related_sequence View Maps
sww1674_217 STS 46.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026210 Gene Prediction 52,703,438 - 52,705,203 () related_sequence View Maps
sww1674_220 STS 46.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g026210 Gene Prediction 52,703,438 - 52,705,203 () related_sequence View Maps
sww2078_220 STS 63.7 No other positions
sww2344_194 STS 69.37 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 6 Sb06g030550 Gene Prediction 58,946,010 - 58,959,850 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 5 Sb05g006520 Gene Prediction 10,622,824 - 10,628,985 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g025710 Gene Prediction 55,132,745 - 55,134,038 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g005650 Gene Prediction 5,542,232 - 5,546,864 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g027560 Gene Prediction 57,344,236 - 57,353,369 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g031490 Gene Prediction 61,449,894 - 61,451,384 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g000720 Gene Prediction 572,012 - 573,566 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g027380 Gene Prediction 54,875,575 - 54,890,945 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g032180 Gene Prediction 60,608,340 - 60,612,151 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g005390 Gene Prediction 7,484,674 - 7,492,346 () related_sequence View Maps
sww2517_264 STS 87.99 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g036950 Gene Prediction 64,979,656 - 64,980,012 () related_sequence View Maps
sww2589_216 STS 97.53 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g040890 Gene Prediction 68,408,621 - 68,413,128 () related_sequence View Maps
sww352_173 STS 101.35 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g013820 Gene Prediction 18,231,509 - 18,232,184 () related_sequence View Maps
sww2106_285 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g001540 Gene Prediction 1,398,834 - 1,402,445 () related_sequence View Maps
nfsg048_197 SSR 13.96 No other positions
nfsg048_240 SSR 13.96 No other positions
sww2402_208 STS 16.65 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww2402_232 STS 16.65 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww1892_206 STS 22.87 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006280 Gene Prediction 6,409,114 - 6,412,035 () related_sequence View Maps
sww2648_209 STS 24.52 No other positions
sww2338_150 STS 24.86 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g006930 Gene Prediction 7,155,157 - 7,156,351 () related_sequence View Maps
sww88_207 STS 31.15 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps
sww88_179 STS 32.49 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g008020 Gene Prediction 8,466,486 - 8,469,509 () related_sequence View Maps