grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps IIIa-f
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: IIIa-f
Map Start: 0 cM
Map Stop: 91.66 cM
Features by Type:
5 SSR
29 STS
34 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 34.       of 2 | Next
Switchgrass - Okada 2010 - IIIa-f
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww1828_186 STS 35.62 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g021720 Gene Prediction 51,194,456 - 51,198,230 () related_sequence View Maps
sww530_365 STS 37 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g019680 Gene Prediction 48,534,473 - 48,535,199 () related_sequence View Maps
sww2538_219 STS 56.69 No other positions
sww82_261 STS 66.51 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g002225 Gene Prediction 2,362,817 - 2,372,739 () related_sequence View Maps
sww82_249 STS 67.07 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g002225 Gene Prediction 2,362,817 - 2,372,739 () related_sequence View Maps
sww2142_204 STS 72.78 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g001120 Gene Prediction 996,360 - 997,265 () related_sequence View Maps
sww2134_241 STS 73.23 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g001120 Gene Prediction 996,360 - 997,265 () related_sequence View Maps
sww1556_180 STS 73.95 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g000910 Gene Prediction 782,684 - 787,008 () related_sequence View Maps
sww1953_295 STS 73.95 No other positions
sww1953_297 STS 73.95 No other positions
nfsg214_330 SSR 0 No other positions
sww1947_214 STS 14.58 No other positions
sww1947_216 STS 14.58 No other positions
nfsg225_490 SSR 17.78 No other positions
nfsg225_494 SSR 17.78 No other positions
sww1828_186 STS 35.62 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g021720 Gene Prediction 51,194,456 - 51,198,230 () related_sequence View Maps
sww530_365 STS 37 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g019680 Gene Prediction 48,534,473 - 48,535,199 () related_sequence View Maps
sww2503_211 STS 42.53 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g025470 Gene Prediction 54,884,503 - 54,885,823 () related_sequence View Maps
nfsg264_234 SSR 48.96 No other positions
sww1841_256 STS 48.96 No other positions
sww1841_258 STS 48.96 No other positions
sww875_248 STS 48.96 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g014930 Gene Prediction 14,268,675 - 14,271,394 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 9 Sb09g006050 Gene Prediction 8,731,871 - 8,733,975 () related_sequence View Maps
nfsg264_211 SSR 50.23 No other positions
sww2538_219 STS 56.69 No other positions
sww1673_240 STS 60.87 No other positions