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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
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Correspondences
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Maps Vb-m
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Draw Maps Using
Same Scale:		 No Yes
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Menu Order of Comparative Maps: Predefined
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Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: Vb-m
Map Start: 0 cM
Map Stop: 126.32 cM
Features by Type:
15 SSR
37 STS
52 Total

Map Features

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Items 1 to 25 of 52.       of 3 | Next
Switchgrass - Okada 2010 - Vb-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww2106_277 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g001540 Gene Prediction 1,398,834 - 1,402,445 () related_sequence View Maps
sww511_250 STS 9.45 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g002990 Gene Prediction 3,034,619 - 3,036,827 () related_sequence View Maps
sww2402_206 STS 17.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww898_446 STS 25.49 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g007760 Gene Prediction 8,143,622 - 8,148,350 () related_sequence View Maps
sww1539_277 STS 33.28 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g002780 Gene Prediction 2,936,916 - 2,938,144 () related_sequence View Maps
sww1539_273 STS 34.04 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g002780 Gene Prediction 2,936,916 - 2,938,144 () related_sequence View Maps
sww1824_220 STS 36.36 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g010380 Gene Prediction 11,221,916 - 11,224,857 () related_sequence View Maps
sww1824_227 STS 36.36 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g010380 Gene Prediction 11,221,916 - 11,224,857 () related_sequence View Maps
sww2250_228 STS 73 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g029990 Gene Prediction 58,271,770 - 58,273,260 () related_sequence View Maps
sww2088_235 STS 86.48 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 8 Sb08g023050 Gene Prediction 55,183,145 - 55,188,964 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g036260 Gene Prediction 66,019,870 - 66,022,125 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 1 Sb01g033360 Gene Prediction 56,595,053 - 56,601,203 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g035300 Gene Prediction 63,460,265 - 63,467,097 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g024920 Gene Prediction 59,894,188 - 59,896,157 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g032720 Gene Prediction 67,382,393 - 67,384,924 () related_sequence View Maps
sww1896_199 STS 91.52 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g036920 Gene Prediction 64,954,641 - 64,964,580 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g027700 Gene Prediction 57,595,719 - 57,600,410 () related_sequence View Maps
sww1575_233 STS 101.74 No other positions
sww1575_239 STS 101.74 No other positions
sww2132_229 STS 110.49 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g043690 Gene Prediction 70,957,172 - 70,960,283 () related_sequence View Maps
sww332_305 STS 126.32 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 7 Sb07g003060 Gene Prediction 3,328,138 - 3,330,610 () related_sequence View Maps
sww2106_277 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g001540 Gene Prediction 1,398,834 - 1,402,445 () related_sequence View Maps
sww511_250 STS 9.45 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g002990 Gene Prediction 3,034,619 - 3,036,827 () related_sequence View Maps
sww2581_217 STS 16.8 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g013930 Gene Prediction 18,521,500 - 18,525,418 () related_sequence View Maps
sww2402_206 STS 17.06 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g004830 Gene Prediction 5,121,507 - 5,125,016 () related_sequence View Maps
sww898_446 STS 25.49 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g007760 Gene Prediction 8,143,622 - 8,148,350 () related_sequence View Maps
sww1539_277 STS 33.28 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g002780 Gene Prediction 2,936,916 - 2,938,144 () related_sequence View Maps
sww1539_273 STS 34.04 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 2 Sb02g002780 Gene Prediction 2,936,916 - 2,938,144 () related_sequence View Maps
sww1824_220 STS 36.36 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g010380 Gene Prediction 11,221,916 - 11,224,857 () related_sequence View Maps
sww1824_227 STS 36.36 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g010380 Gene Prediction 11,221,916 - 11,224,857 () related_sequence View Maps
sww1923_174 STS 42.74 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g011550 Gene Prediction 12,944,846 - 12,945,490 () related_sequence View Maps