grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Switchgrass-Okada 2010
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ia-m
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
STS
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Switchgrass - Okada 2010 [ View Map Set Info ]
Map Name: Ia-m
Map Start: 0 cM
Map Stop: 82.85 cM
Features by Type:
10 SSR
55 STS
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 65.       of 3 | Next
Switchgrass - Okada 2010 - Ia-m
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sww1513_235 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004700 Gene Prediction 4,508,803 - 4,512,470 () related_sequence View Maps
sww333_153 STS 7.15 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g005290 Gene Prediction 5,136,093 - 5,139,727 () related_sequence View Maps
sww2315_149 STS 10.93 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g001820 Gene Prediction 1,576,525 - 1,581,154 () related_sequence View Maps
sww2307_149 STS 11.21 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035990 Gene Prediction 65,792,082 - 65,796,153 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g003090 Gene Prediction 2,906,074 - 2,909,737 () related_sequence View Maps
sww2405_159 STS 12.57 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004243 Gene Prediction 4,039,138 - 4,039,395 () related_sequence View Maps
sww1513_176 STS 14.42 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004700 Gene Prediction 4,508,803 - 4,512,470 () related_sequence View Maps
sww2971_316 STS 14.47 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g024970 Gene Prediction 54,832,807 - 54,836,740 () related_sequence View Maps
sww2955_168 STS 23.05 No other positions
sww2971_322 STS 42.42 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g024970 Gene Prediction 54,832,807 - 54,836,740 () related_sequence View Maps
sww1591_185 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g031170 Gene Prediction 61,155,864 - 61,162,414 () related_sequence View Maps
sww2396_285 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g031170 Gene Prediction 61,155,864 - 61,162,414 () related_sequence View Maps
sww2396_288 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g031170 Gene Prediction 61,155,864 - 61,162,414 () related_sequence View Maps
sww2558_190 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g030550 Gene Prediction 60,528,797 - 60,532,208 () related_sequence View Maps
sww2558_193 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g030550 Gene Prediction 60,528,797 - 60,532,208 () related_sequence View Maps
sww2953_129 STS 58.71 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g030550 Gene Prediction 60,528,797 - 60,532,208 () related_sequence View Maps
sww2953_126 STS 63.95 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g030550 Gene Prediction 60,528,797 - 60,532,208 () related_sequence View Maps
sww807_156 STS 65.11 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g030840 Gene Prediction 60,510,083 - 60,514,690 () related_sequence View Maps
sww2027_491 STS 73.96 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g035230 Gene Prediction 65,063,929 - 65,068,112 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 3 Sb03g030500 Gene Prediction 58,750,361 - 58,754,602 () related_sequence View Maps
sww1948_228 STS 78.15 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g012110 Gene Prediction 17,936,918 - 17,937,676 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g036070 Gene Prediction 65,849,006 - 65,850,590 () related_sequence View Maps
sww1948_232 STS 78.15 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 10 Sb10g012110 Gene Prediction 17,936,918 - 17,937,676 () related_sequence View Maps
Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g036070 Gene Prediction 65,849,006 - 65,850,590 () related_sequence View Maps
sww1777_207 STS 82.85 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g038380 Gene Prediction 67,808,318 - 67,810,422 () related_sequence View Maps
sww1777_246 STS 82.85 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g038380 Gene Prediction 67,808,318 - 67,810,422 () related_sequence View Maps
sww2362_234 STS 82.85 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g037610 Gene Prediction 67,178,238 - 67,181,347 () related_sequence View Maps
sww2362_275 STS 82.85 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g037610 Gene Prediction 67,178,238 - 67,181,347 () related_sequence View Maps
sww1513_235 STS 0 Sorghum - Sorghum bicolor JGI8X 2007 - Chr. 4 Sb04g004700 Gene Prediction 4,508,803 - 4,512,470 () related_sequence View Maps