Species |
New |
Data Set |
Arabidopsis |
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Atwell et. al, Nature June 2010. Genotype, phenotype, association data. ~214,000 SNPs, 199 Germplasm, 107 Phenotypes, TAIR10. [View] New! Explore Atwell GWAS data in our Association Viewer (beta), TAIR 10
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2010 Project SNP Discovery: 637,522 SNPs x 20 ecotypes, TAIR10. [View]
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2010 Project 250K SNP chip genotypes v3.06, 214,052 SNPs x 1307 ecotypes, TAIR10. [View]
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2010 Project 250K SNP chip genotypes v3.04, 214,545 SNPs x 1179 ecotypes, TAIR10. [View]
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1001 Genomes/WTCHG SNPs from dbSNP, 2.7 million SNPs, 17 ecotypes, TAIR10. [View]
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Rice |
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Zhao K, et al, Nat Comm, 2011. Rice GWAS study. 413 diverse accessions, Rice Diversity 44K SNP array, 34 phenotypes. MSU6 coordinates [View] |
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Zhao K, et al, Nat Comm, 2011. Rice GWAS study. 413 diverse accessions, Rice Diversity 44K SNP array, 34 phenotypes. MSU7 coordinates [View] |
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Huang X, et al, Nat Genetics 2010 Nov. Rice HaplotypeMap GWAS study. 842,474 SNPs*, 374 landraces, 14 phenotypes. *IRGSP4 coordinates [View] |
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Zhao K, et al PLoS May 2010, Rice Diversity 1536 SNP array: 1311 SNPs x 395 varieties, mapped to MSU6. [View] |
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Zhao K, et al PLoS May 2010, Rice Diversity 1536 SNP array: 1311 SNPs x 395 varieties, mapped to MSU7. [View] |
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MSU6, McNally et al. 2009, 160,000 SNPs x 21 varieties (incl. Nipponbare ref.) from OryzaSNP. [View] |
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(G) Fan C, et al, Theor Appl Genet, 2009. C-A mutation in GS3 associated with grain length, phenotype study. 180 germplasm, trait: grain length [View] |
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(G) Yoshida K, et al, Genes & genetic systems, 2009. DNA polymorphism in Pi-ta gene. 12 germplasm, trait: blast resistance [View] |
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(G) Maas L, et al, Theor Appl Genet, 2010. Flowering time study. 19 germplasm, trait: days to flower, grain yield [View] |
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(G) Wang X, et al, Phytopathology, 2008. Diversity study at Pi-ta locus. 47 germplasm, trait: blast disease [View] |
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(G) Jia Y, et al, Pythopathology, 2003. Diversity study of Pi-ta locus. 9 germplasm, trait: blast disease [View] |
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(G) Wei X, et al, Plant Physiol, 2010. Study of DTH8 supression of flowering time, plant height, yield potential. 40 germplasm, trait: days to heading [View] |
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(G) Ebana K, et al, Theor Appl Genet, 2011. Heading date diversity study. 12 germplasm, trait: blast resistance [View] |
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(G) Study of molecular evolution of shattering in U.S. weedy rice. 105 germplasm, trait: grain shattering [View] |
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(G) Mao H, et al, Proc Natl Acad Sci USA, 2010. Grain size variation study. 82 germplasm, trait: grain length [View] |
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(G) Jia Y, et al, Phytopathology, 2004. Pi-ta gene study. 20 germplasm, trait: blast disease [View] |
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(G) Wang X, et al, Plant Breeding, 2009. Pi-ta gene phenotype study. 194 germplasm, trait: blast resistance [View] |
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(G) Wang Z, et al, Plant Breeding, 2007. Pi-ta gene phenotype study. 138 germplasm, trait: blast resistance [View] |
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(G) Shomura et al, Nat Gen, 2008. Grain size phenotype study. 84 germplasm, traits: grain length, grain width, grain width-length ratio [View] |
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(G) Sweeney et al, PLoS Gen, 2007. Pericarp phenotype study. 440 germplasm, trait: pericarp color [View] |
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Gross B, et al, Mol Ecol, 2010. Rice grain color SNP diversity study on Chr 12, 633 SNPs x 143 rice accessions. [View] |
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Smaller scale, SSR, SNP, QTL diversity studies: Caicedo et al, 2007; Olsen et al, 2006; Garris et al, 2005; Lu et al, 2005; Semon et al, 2005; Jain et al, 2004; Thomson et al, 2003; Ramalingam et al, 2003; Ni et al, 2002; Xing et al, 2002; Moncada et al, 2001; Price A. et al, 2000; Maheswaran et al, 2000; G. Wang et al, 1994. |
Maize |
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Maize Diversity Hapmap1, AGPv2 coordinates, 1.6 million SNP x 27 NAM lines. [View]
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Sorghum |
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6 datasets from Hamblin et. al. and the Sorghum Diversity Project which study variation using sequencing of direct PCR and SSRs [View]
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Wheat |
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SNP discovery data from the 'Haplotype polymorphism in polyploid wheats and their diploid ancestors' NSF project. [View]
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Germplasm Search
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Also see our Germplasm module.
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