Experiment "Haplotype Diversity at the Pi-ta Locus in Cultivated Rice..."

Title	Haplotype Diversity at the Pi-ta Locus in Cultivated Rice and Its Wild Relatives
Design	A panel of 48 Oryza accessions were evaluated for disease resistance againt Magnaporthe oryzae (formerly Magnaporthe grisea). The accessions were also sequenced to investigate the natural diversity present in the Pi-ta gene.
Polymorphism Type (0)	None
Allele Scoring Protocol (0)
PI(s)	Dr. Yulin Jia
Comments	Reference: Gramene Lit ID 54737

Germplasm (47)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
#1995-12	N/A	#1995-12	Yulin Jia Lab	Show Allele Data
#1995-14	N/A	#1995-14	Yulin Jia Lab	Show Allele Data
#1996-05	N/A	#1996-05	Yulin Jia Lab	Show Allele Data
#1996-1	N/A	#1996-1	Yulin Jia Lab	Show Allele Data
#1996-11	N/A	#1996-11	Yulin Jia Lab	Show Allele Data
#1997-2	N/A	#1997-2	Yulin Jia Lab	Show Allele Data
#1997-33	N/A	#1997-33	Yulin Jia Lab	Show Allele Data
#1997-6	N/A	#1997-6	Yulin Jia Lab	Show Allele Data
18A	N/A	18A	Yulin Jia Lab	Show Allele Data
AMANE	PI373335c	PI373335c	Yulin Jia Lab	Show Allele Data
Baldo	PI415656	PI415656	Yulin Jia Lab	Show Allele Data
Bankoram	PI369455	PI369455	Yulin Jia Lab	Show Allele Data
Banks	PI643127	Banks	Yulin Jia Lab	Show Allele Data
Botika SR	PI430387	PI430387	Yulin Jia Lab	Show Allele Data
Goli	PI430388	PI430388	Yulin Jia Lab	Show Allele Data
GPNO 22236	PI432555	PI432555	Yulin Jia Lab	Show Allele Data
Hatadawee	PI373122c	PI373122c	Yulin Jia Lab	Show Allele Data
IR 2151-745-3-1	PI408473	PI408473	Yulin Jia Lab	Show Allele Data
IRGC-101510	PI590409	PI590409	Yulin Jia Lab	Show Allele Data
IRGC-101524	PI590404	PI590404	Yulin Jia Lab	Show Allele Data
IRRI-IRGC-101073	PI590412	PI590412	Yulin Jia Lab	Show Allele Data
Kaluwee	PI373346	PI373346	Yulin Jia Lab	Show Allele Data
Katy	PI584902	PI584902	Yulin Jia Lab	Show Allele Data
Kwadwo Amoa	PI369447	PI369447	Yulin Jia Lab	Show Allele Data
LA3	N/A	LA3	Yulin Jia Lab	Show Allele Data
Luhongzao	PI615199	PI615199	Yulin Jia Lab	Show Allele Data
M202	PI494105	PI494105	Yulin Jia Lab	Show Allele Data
MS4	N/A	MS4	Yulin Jia Lab	Show Allele Data
Nanjing 11	PI615197	PI615197	Yulin Jia Lab	Show Allele Data
Nema	PI430981c	PI430981c	Yulin Jia Lab	Show Allele Data
Nipponbare	PI514663	PI514663	Yulin Jia Lab	Show Allele Data
Oryzica Llanos 5	PI584668	PI584668	Yulin Jia Lab	Show Allele Data
Patchaiperumal	PI373331c	PI373331c	Yulin Jia Lab	Show Allele Data
PI223065R	PI590400	PI590400	Yulin Jia Lab	Show Allele Data
Pratao	PI460635	PI460635	Yulin Jia Lab	Show Allele Data
Raminad str. 3	PI160476	PI160476	Yulin Jia Lab	Show Allele Data
Red Khosha Cerma	PI277414	PI277414	Yulin Jia Lab	Show Allele Data
StgB	N/A	StgB	Yulin Jia Lab	Show Allele Data
StgS	N/A	StgS	Yulin Jia Lab	Show Allele Data
Te Qing	PI536047	PI536047	Yulin Jia Lab	Show Allele Data
Tetep	PI431324	PI431324	Yulin Jia Lab	Show Allele Data
TOg 6244	PI450246	PI450246	Yulin Jia Lab	Show Allele Data
TOg 6250	PI450252	PI450252	Yulin Jia Lab	Show Allele Data
TOg 6327	PI450298	PI450298	Yulin Jia Lab	Show Allele Data
Tsuyake	N/A	Tsuyake	Yulin Jia Lab	Show Allele Data
TX4	N/A	TX4	Yulin Jia Lab	Show Allele Data
Yashiro-mochi	N/A	Yashiro-mochi	Yulin Jia Lab	Show Allele Data

Phenotype Data (47)

Download Phenotype Data

Traits (1)

Trait Name	Trait Ontology Accession	Phenotype Measurement
blast disease	TO:0000074	PATO:0001178; resistant to; ECO:0000002; direct assay result; EO:0007226; Magnaporthe grisea; "Phenotypes (resistance or susceptibility) were scored 7 days after inoculation. Resistance was scored based on the absence of visible infection and conidia in inoculated tissue, while susceptibility was scored by the presence of lesion (size >3 mm in length) and the presence of conidia in the lesions."