Experiment "Deletion in a gene associated with grain size increased y..."

Title	Deletion in a gene associated with grain size increased yields during rice domestication.
Design	Analysis for grain size in an F2 cross population between Nipponbare (japonica) and Kasalath (indica) cultivars was carried out to identify the genes involved in the increase in grain yield.
Polymorphism Type (0)	None
Allele Scoring Protocol (0)
PI(s)	Masahiro Yano
Comments	Reference: Shomura A, et. al. [Gramene Lit ID 25494]

Germplasm (84)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
AIKOKU	N/A	AIKOKU		Show Allele Data
AKAGE	N/A	AKAGE		Show Allele Data
AKAMAI	N/A	AKAMAI_1	An undescore and a numerical ID were added to the original accession name to distingush accessions with the same name.	Show Allele Data
AKAMAI	N/A	AKAMAI_2	An undescore and a numerical ID were added to the original accession name to distingush accessions with the same name.	Show Allele Data
AKAMAI	N/A	AKAMAI_3	An undescore and a numerical ID were added to the original accession name to distingush accessions with the same name.	Show Allele Data
AKAMAI	N/A	AKAMAI_4	An undescore and a numerical ID were added to the original accession name to distingush accessions with the same name.	Show Allele Data
Anjana Dhan	N/A	Anjana Dhan		Show Allele Data
ARC 5955	N/A	ARC 5955		Show Allele Data
ARC 7291	N/A	ARC 7291		Show Allele Data
Asu	N/A	Asu		Show Allele Data
Basilanon	N/A	Basilanon		Show Allele Data
Bei Khe	N/A	Bei Khe		Show Allele Data
BOUZU MOCHI	N/A	BOUZU MOCHI		Show Allele Data
Co13	N/A	Co13		Show Allele Data
DANGO	N/A	DANGO		Show Allele Data
Davao 1	N/A	Davao 1		Show Allele Data
Deng Pao Zhai (Toufutsusai)	N/A	Deng Pao Zhai (Toufutsusai)		Show Allele Data
FUKOKU	N/A	FUKOKU		Show Allele Data
GAISEN MOCHI	N/A	GAISEN MOCHI		Show Allele Data
GINBOUZU	N/A	GINBOUZU		Show Allele Data
HAKAMURI(YOKOYAMA)	N/A	HAKAMURI(YOKOYAMA)		Show Allele Data
HASSOKUHO	N/A	HASSOKUHO		Show Allele Data
HIMENOMOCHI	N/A	HIMENOMOCHI		Show Allele Data
HINODE	N/A	HINODE		Show Allele Data
HIRAYAMA	N/A	HIRAYAMA		Show Allele Data
HIYADACHITOU	N/A	HIYADACHITOU		Show Allele Data
HOSOGARA	N/A	HOSOGARA		Show Allele Data
IR 58	N/A	IR 58		Show Allele Data
IRIMA NISHIKI	N/A	IRIMA NISHIKI		Show Allele Data
ISHIJIRO	N/A	ISHIJIRO		Show Allele Data
Jaguary	N/A	Jaguary		Show Allele Data
Jarjan	N/A	Jarjan		Show Allele Data
Jena 035	N/A	Jena 035		Show Allele Data
Jhona 2	N/A	Jhona 2		Show Allele Data
Jinguoin	N/A	Jinguoin		Show Allele Data
JOUSHUU	N/A	JOUSHUU		Show Allele Data
KABASHIKO	N/A	KABASHIKO		Show Allele Data
KAHEI	N/A	KAHEI		Show Allele Data
Kalo Dhan	N/A	Kalo Dhan		Show Allele Data
Kaluheenati	N/A	Kaluheenati		Show Allele Data
KAMEJI	N/A	KAMEJI		Show Allele Data
KANEKO	N/A	KANEKO		Show Allele Data
KARAHOUSHI	N/A	KARAHOUSHI		Show Allele Data
Kasalath	N/A	Kasalath		Show Allele Data
Khao Nok	N/A	Khao Nok		Show Allele Data
KYOUTOASAHI	N/A	KYOUTOASAHI		Show Allele Data
Lebed	N/A	Lebed		Show Allele Data
Ma sho	N/A	Ma sho		Show Allele Data
MANSAKU	N/A	MANSAKU		Show Allele Data
MEGURO MOCHI	N/A	MEGURO MOCHI		Show Allele Data
Milyang 23	N/A	Milyang 23		Show Allele Data
MORITA WASE	N/A	MORITA WASE		Show Allele Data
Muha	N/A	Muha		Show Allele Data
Naba	N/A	Naba		Show Allele Data
NAGOYA SHIRO	N/A	NAGOYA SHIRO		Show Allele Data
Nepal 555	N/A	Nepal 555		Show Allele Data
Nepal 8	N/A	Nepal 8		Show Allele Data
Nipponbare	N/A	Nipponbare		Show Allele Data
OIRAN	N/A	OIRAN		Show Allele Data
OKABO	N/A	OKABO		Show Allele Data
OKKA MODOSHI	N/A	OKKA MODOSHI		Show Allele Data
OMACHI	N/A	OMACHI		Show Allele Data
Pinulupot 1	N/A	Pinulupot 1		Show Allele Data
Puluik Arang	N/A	Puluik Arang		Show Allele Data
Rexmont	N/A	Rexmont		Show Allele Data
RIKUTOU RIKUU 2	N/A	RIKUTOU RIKUU 2		Show Allele Data
Ryou Suisan Koumai	N/A	Ryou Suisan Koumai		Show Allele Data
SEKIYAMA	N/A	SEKIYAMA		Show Allele Data
SENSHOU	N/A	SENSHOU		Show Allele Data
SHICHIMENCHOU MOCHI	N/A	SHICHIMENCHOU MOCHI		Show Allele Data
SHINRIKI	N/A	SHINRIKI		Show Allele Data
SHINRIKI MOCHI	N/A	SHINRIKI MOCHI		Show Allele Data
SHINYAMADAHO 2	N/A	SHINYAMADAHO 2		Show Allele Data
SHIROINE(KEMOMI)	N/A	SHIROINE(KEMOMI)		Show Allele Data
Shuusoushu	N/A	Shuusoushu		Show Allele Data
Shwe Nang Gyi	N/A	Shwe Nang Gyi		Show Allele Data
Surjamukhi	N/A	Surjamukhi		Show Allele Data
Tadukan	N/A	Tadukan		Show Allele Data
TOUBOSHI	N/A	TOUBOSHI		Show Allele Data
Tupa 121-3	N/A	Tupa 121-3		Show Allele Data
Tupa729	N/A	Tupa729		Show Allele Data
Urasan 1	N/A	Urasan 1		Show Allele Data
WATARIBUNE	N/A	WATARIBUNE		Show Allele Data
YAMADA BAKE	N/A	YAMADA BAKE		Show Allele Data

Phenotype Data (84)

Download Phenotype Data

Traits (3)

Trait Name	Trait Ontology Accession	Phenotype Measurement
grain length	TO:0000734	UO:0000016; ECO:0000059; experimental phenotypic evidence; Measuring the average grain length of each cultivar
grain length to width ratio	TO:0002731	ECO:0000176; mutant visible phenotype analysis; Measuring the average grain length to width ratio (length/width) of each cultivar
grain width	TO:0000402	UO:0000016; ECO:0000059; experimental phenotypic evidence; Measuring the average grain witdth of each cultivar