Experiment "Population Structure and Breeding Patterns of 145 U.S. Ri..."

Title	Population Structure and Breeding Patterns of 145 U.S. Rice Cultivars Based on SSR Marker Analysis
Design	115 U.S rice cultivars and 30 ancestral rice accessions introduced from Asia were genotyped by means of 169 genomic SSR markers.
Polymorphism Type (1)	SSR
Allele Scoring Protocol (1)	PCR products were size separated using ABI 3700 DNA analyzer; SSR fragements sizes were estimated with GenScan 3.1.2 software. Alleles were scored with Genotyper 2.5 software using the LocalSouthernMethod, and binned manually.
PI(s)	McCouch-S-R, Tai-T-H
Comments	Population structure was inferred using genetic-distance method with 169 SSR markers. Reference: Lu et al., 2005.

Germplasm (145)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
71cr-5038	CIor9902	CIor9902	NSGC	Show Allele Data
A-301	PI505817	PI505817	NSGC	Show Allele Data
Adair	PI568890	PI568890	NSGC	Show Allele Data
Alan	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Arkrose	CIor8310	CIor8310	NSGC	Show Allele Data
B3812A	CIor9515	CIor9515	NSGC	Show Allele Data
B4512a1-32	CIor9122	CIor9122	NSGC	Show Allele Data
B572a3-48	CIor9545	CIor9545	NSGC	Show Allele Data
Badkalamkati	IRGC45011	RA4991	IRRI	Show Allele Data
Belle Patna	CIor9433	CIor9433	NSGC	Show Allele Data
Bellemont	CIor9978	CIor9978	NSGC	Show Allele Data
Bengal	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Blue Rose	CIor1962	CIor1962	NSGC	Show Allele Data
Bluebelle	CIor9544	CIor9544	NSGC	Show Allele Data
Bluebonnet	CIor8322	CIor8322	NSGC	Show Allele Data
Bluebonnet 50	CIor8990	CIor8990	NSGC	Show Allele Data
Bond	PI474579	PI474579	NSGC	Show Allele Data
Bonnet 73	CIor9654	CIor9654	NSGC	Show Allele Data
Brazos	CIor9875	CIor9875	NSGC	Show Allele Data
C3-72-3	CIor9217	CIor9217	NSGC	Show Allele Data
Calady	CIor7786	CIor7786	NSGC	Show Allele Data
Calady 40	CIor9202	CIor9202	NSGC	Show Allele Data
Calmochi-101	PI494104	PI494104	NSGC	Show Allele Data
Calmochi-201	CIor9973	CIor9973	NSGC	Show Allele Data
Calmochi-202	CIor9977	CIor9977	NSGC	Show Allele Data
Caloro	PI400079	PI400079	NSGC	Show Allele Data
Calrose	CIor8988	CIor8988	NSGC	Show Allele Data
Calrose 76	n/a	Thomas Tai stock	IRRI	Show Allele Data
Carolina Gold	n/a	Thomas Tai stock	IRRI	Show Allele Data
Century Patna 231	CIor8993	CIor8993	NSGC	Show Allele Data
Chinese	PI431222	PI431222	NSGC	Show Allele Data
Cocodrie	n/a	Thomas Tai stock	URRN	Show Allele Data
Colusa	CIor1600	CIor1600	NSGC	Show Allele Data
CS-M3	CIor9675	CIor9675	NSGC	Show Allele Data
CS-S4	CIor9835	CIor9835	NSGC	Show Allele Data
Cypress	PI561736	PI561736	DBNRRC	Show Allele Data
D31	CIor11038	CIor11038	NSGC	Show Allele Data
Dawn	CIor9534	CIor9534	NSGC	Show Allele Data
Dee Geo Woo Gen	PI279131	PI279131	NSGC	Show Allele Data
Delitus	CIor1206	CIor1206	NSGC	Show Allele Data
DELLA	CIor9483	CIor9483	NSGC	Show Allele Data
Dellrose	n/a	Thomas Tai stock	URRN	Show Allele Data
Delrex	CIor8320	CIor8320	NSGC	Show Allele Data
Dixiebelle	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Drew	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Earl	n/a	Thomas Tai stock	URRN	Show Allele Data
Early Wataribune	CIor9738	CIor9738	NSGC	Show Allele Data
Edith	CIor2127	CIor2127	NSGC	Show Allele Data
Fortuna	CIor1344	CIor1344	NSGC	Show Allele Data
Gulfmont	n/a	Thomas Tai stock	URRN	Show Allele Data
Gulfrose	CIor9416	CIor9416	NSGC	Show Allele Data
Hill Long Grain	CIor9052	CIor9052	NSGC	Show Allele Data
Honduras	n/a	Thomas Tai stock	McCouch Lab	Show Allele Data
Improved Blue Rose	CIor2128	CIor2128	NSGC	Show Allele Data
Improved Bluebonnet	CIor8992	CIor8992	NSGC	Show Allele Data
IR 456-3-2-1	PI321161	PI321161	NSGC	Show Allele Data
IR-659-10-8-3	PI331581	PI331581	NSGC	Show Allele Data
IR-8	PI312627	PI312627	NSGC	Show Allele Data
Jacinto	n/a	Thomas Tai stock	URRN	Show Allele Data
Jackson	PI572412	PI572412	DBNRRC	Show Allele Data
Jefferson	n/a	Thomas Tai stock	URRN	Show Allele Data
Jodon	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
K-65 Laat	PI276884	PI276884	NSGC	Show Allele Data
Katy	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Kaybonnet	n/a	Thomas Tai stock	URRN	Show Allele Data
Koshihikari	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
L-201	CIor9971	CIor9971	NSGC	Show Allele Data
L-202	n/a	Thomas Tai stock	IRRI	Show Allele Data
L-205	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
LA110	CIor9962	CIor9962	NSGC	Show Allele Data
Labelle	CIor9708	CIor9708	NSGC	Show Allele Data
LaCassine	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
LaCrosse	CIor8985	RA5061	NSGC	Show Allele Data
Lady Wright	CIor5451	CIor5451	NSGC	Show Allele Data
Lafitte	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Lagrue	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Latisail	PI283684	PI283684	NSGC	Show Allele Data
Leah	CIor9979	CIor9979	NSGC	Show Allele Data
Lebonnet	CIor9882	CIor9882	NSGC	Show Allele Data
Lemont	n/a	Thomas Tai stock	IRRI	Show Allele Data
M-101	n/a	Thomas Tai stock	NSGC	Show Allele Data
M-102	PI505818	PI505818	NSGC	Show Allele Data
M-201	CIor9980	CIor9980	IRRI	Show Allele Data
M-204	PI559472	PI559472	DBNRRC	Show Allele Data
M-301	CIor9973	CIor9973	NSGC	Show Allele Data
M-302	CIor9976	CIor9976	NSGC	Show Allele Data
M-401	CIor9975	CIor9975	NSGC	Show Allele Data
M5	CIor9964	CIor9964	NSGC	Show Allele Data
M7	CIor9967	CIor9967	NSGC	Show Allele Data
M9	CIor9968	CIor9968	NSGC	Show Allele Data
Madison	n/a	Thomas Tai stock	URRN	Show Allele Data
Mars	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Maybelle	PI538248	PI538248	NSGC	Show Allele Data
Mercury	PI506428	PI506428	NSGC	Show Allele Data
Millie	PI538254	PI538254	NSGC	Show Allele Data
Nato	CIor8998	CIor8998	NSGC	Show Allele Data
Newbonnet	PI474580	PI474580	NSGC	Show Allele Data
Newrex	CIor9969	CIor9969	NSGC	Show Allele Data
Nira	CIor2702	CIor2702	NSGC	Show Allele Data
Nortai	CIor9836	CIor9836	NSGC	Show Allele Data
Northrose	CIor9407	CIor9407	NSGC	Show Allele Data
Nova	CIor9459	RA5056	NSGC	Show Allele Data
Nova 66	CIor9481	CIor9481	NSGC	Show Allele Data
Nova 76	CIor9948	CIor9948	NSGC	Show Allele Data
Orion	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Palmyra	CIor9463	CIor9463	NSGC	Show Allele Data
Pecos	PI476818	PI476818	NSGC	Show Allele Data
Prelude	CIor8311	CIor8311	NSGC	Show Allele Data
Rexark	CIor8644	CIor8644	NSGC	Show Allele Data
Rexark Rogue	n/a	Thomas Tai stock	McCouch Lab	Show Allele Data
Rexmont	n/a	Thomas Tai stock	University of Arkansas	Show Allele Data
Rexoro	n/a	Thomas Tai stock	IRRI	Show Allele Data
Rexoro Rogue	CIor9166	CIor9166	NSGC	Show Allele Data
Rico 1	PI502969	PI502969	NSGC	Show Allele Data
Rosemont	n/a	Thomas Tai stock	URRN	Show Allele Data
S-102	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
S-201	CIor9974	CIor9974	NSGC	Show Allele Data
S6	CIor9965	CIor9965	NSGC	Show Allele Data
Saturn	CIor9540	RA5064	NSGC	Show Allele Data
Shoemed	PI392539	PI392539	NSGC	Show Allele Data
Sinampaga Selection	CIor12168	CIor12168	NSGC	Show Allele Data
Skybonnet	PI476819	PI476819	NSGC	Show Allele Data
Starbonnet	CIor9584	CIor9584	NSGC	Show Allele Data
Stg-533187	CIor9453	CIor9453	NSGC	Show Allele Data
Stg-59d1350	CIor9556	CIor9556	NSGC	Show Allele Data
Stg-6102515	CIor9580	CIor9580	NSGC	Show Allele Data
Stg-663226	CIor9701	CIor9701	NSGC	Show Allele Data
Stg-697717	CIor 9841	CIor9841	NSGC	Show Allele Data
Sunbonnet	CIor8989	CIor8989	NSGC	Show Allele Data
Supreme Blue Rose	CIor5793	CIor5793	NSGC	Show Allele Data
Taducan	PI280681	PI280681	NSGC	Show Allele Data
Taichung Native 1	PI271672	PI271672	NSGC	Show Allele Data
Tainan Iku 487	PI215936	PI215936	NSGC	Show Allele Data
Tebonnet	PI487195	PI487195	NSGC	Show Allele Data
Teqing	n/a	Thomas Tai stock	NSGC	Show Allele Data
Texas Patna	CIor8321	CIor8321	NSGC	Show Allele Data
Texmont	PI538249	PI538249	NSGC	Show Allele Data
TORO	CIor9013	CIor9013	NSGC	Show Allele Data
TORO-2	PI483070	PI483070	NSGC	Show Allele Data
TP49	CIor8991	CIor8991	NSGC	Show Allele Data
Vegold	CIor9836	CIor9836	NSGC	Show Allele Data
VISTA	CIor12346	CIor12346	NSGC	Show Allele Data
WC6	CIor5309	CIor5309	NSGC	Show Allele Data
Wells	n/a	Thomas Tai stock	DBNRRC	Show Allele Data
Zenith	CIor7787	CIor7787	NSGC	Show Allele Data

Marker Name
Markers 1 to 25 of 169. of 7 \| Next
OSR13	Show Allele Data
RM1	Show Allele Data
RM104	Show Allele Data
RM105	Show Allele Data
RM106	Show Allele Data
RM108	Show Allele Data
RM109	Show Allele Data
RM11	Show Allele Data
RM112	Show Allele Data
RM116	Show Allele Data
RM1167	Show Allele Data
RM118	Show Allele Data
RM1189	Show Allele Data
RM119	Show Allele Data
RM120	Show Allele Data
RM122	Show Allele Data
RM124	Show Allele Data
RM125	Show Allele Data
RM13	Show Allele Data
RM132	Show Allele Data
RM133	Show Allele Data
RM1359	Show Allele Data
RM136	Show Allele Data
RM1362	Show Allele Data
RM1381	Show Allele Data