Experiment "A causal C-A mutation in the second exon of GS3 highly as..."

Title	A causal C-A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional
Design	A total of 180 varieties representing a wide range of rice germplasm were used for association analysis between CÂ–A mutation and Grain Length. A CAPS marker, SF28, based on the CÂ–A polymorphism in the GS3 gene was used in the analysis.
Polymorphism Type (0)	None
Allele Scoring Protocol (0)
PI(s)	Yongzhong Xing
Comments	Reference: Gramene Lit ID 51253

Germplasm (180)

Accession	Acc. Number	Seed Stock (Source)
76–1	N/A	76–1	Show Allele Data
80B	N/A	80B	Show Allele Data
88B	N/A	88B	Show Allele Data
9311	N/A	9311	Show Allele Data
Aihechi	N/A	Aihechi	Show Allele Data
Aijiaonante	N/A	Aijiaonante	Show Allele Data
Aimakang	N/A	Aimakang	Show Allele Data
Aimi	N/A	Aimi	Show Allele Data
Aituogu151	N/A	Aituogu151	Show Allele Data
Aizizhan	N/A	Aizizhan	Show Allele Data
AnnongwanjingB	N/A	AnnongwanjingB	Show Allele Data
Baigedao	N/A	Baigedao	Show Allele Data
Baikehualuo	N/A	Baikehualuo	Show Allele Data
Baikezaohe	N/A	Baikezaohe	Show Allele Data
Baimaodao	N/A	Baimaodao	Show Allele Data
Ballina	N/A	Ballina	Show Allele Data
Banjiemang	N/A	Banjiemang	Show Allele Data
Baoerfu	N/A	Baoerfu	Show Allele Data
Baoxie123B	N/A	Baoxie123B	Show Allele Data
Baoxie7B	N/A	Baoxie7B	Show Allele Data
BASMATI	N/A	BASMATI	Show Allele Data
Bawangbian1	N/A	Bawangbian1	Show Allele Data
Benbanggu	N/A	Benbanggu	Show Allele Data
Bobayong1	N/A	Bobayong1	Show Allele Data
Chaoyang1B	N/A	Chaoyang1B	Show Allele Data
Chenduai3	N/A	Chenduai3	Show Allele Data
Chenlongshuijin	N/A	Chenlongshuijin	Show Allele Data
Chenwan3	N/A	Chenwan3	Show Allele Data
Chikeluo	N/A	Chikeluo	Show Allele Data
Cunguluo	N/A	Cunguluo	Show Allele Data
Cunsanli	N/A	Cunsanli	Show Allele Data
Dandongludao	N/A	Dandongludao	Show Allele Data
Dangyu5	N/A	Dangyu5	Show Allele Data
Dawanluo	N/A	Dawanluo	Show Allele Data
Dianyui409B	N/A	Dianyui409B	Show Allele Data
Dongtingwanxian	N/A	Dongtingwanxian	Show Allele Data
Ergangai	N/A	Ergangai	Show Allele Data
Erjiunan1	N/A	Erjiunan1	Show Allele Data
Esiniu	N/A	Esiniu	Show Allele Data
Fanbopi	N/A	Fanbopi	Show Allele Data
Feidongtang	N/A	Feidongtang	Show Allele Data
Funingzipi	N/A	Funingzipi	Show Allele Data
Gaoyangdian	N/A	Gaoyangdian	Show Allele Data
Gongju73	N/A	Gongju73	Show Allele Data
Gu154	N/A	Gu154	Show Allele Data
Guanglai15	N/A	Guanglai15	Show Allele Data
Guangluai4	N/A	Guangluai4	Show Allele Data
Guichao2	N/A	Guichao2	Show Allele Data
Guihuahuang	N/A	Guihuahuang	Show Allele Data
Gzhenshan97B	N/A	Gzhenshan97B	Show Allele Data
H94	N/A	H94	Show Allele Data
Hanma	N/A	Hanma	Show Allele Data
Heidu4	N/A	Heidu4	Show Allele Data
Hengxianliangchun	N/A	Hengxianliangchun	Show Allele Data
Hongailuo	N/A	Hongailuo	Show Allele Data
Honggu	N/A	Honggu	Show Allele Data
Hongmisandan	N/A	Hongmisandan	Show Allele Data
Hongqi5	N/A	Hongqi5	Show Allele Data
Hongwan1	N/A	Hongwan1	Show Allele Data
Huangkezaonian	N/A	Huangkezaonian	Show Allele Data
Huangpiluo	N/A	Huangpiluo	Show Allele Data
Huangsiguizhan	N/A	Huangsiguizhan	Show Allele Data
Huhui628	N/A	Huhui628	Show Allele Data
Huke3	N/A	Huke3	Show Allele Data
IR24	N/A	IR24	Show Allele Data
IR661-1	N/A	IR661-1	Show Allele Data
J inbaiyin	N/A	J inbaiyin	Show Allele Data
J ingxibai	N/A	J ingxibai	Show Allele Data
J ixieluo	N/A	J ixieluo	Show Allele Data
Jiabala	N/A	Jiabala	Show Allele Data
Jiangnongzao1	N/A	Jiangnongzao1	Show Allele Data
Jing7623	N/A	Jing7623	Show Allele Data
Jing87-304	N/A	Jing87-304	Show Allele Data
JinhuB	N/A	JinhuB	Show Allele Data
Jinnante43B	N/A	Jinnante43B	Show Allele Data
Jinyou1	N/A	Jinyou1	Show Allele Data
JWR221	N/A	JWR221	Show Allele Data
KDL105	N/A	KDL105	Show Allele Data
L301B	N/A	L301B	Show Allele Data
Lamujia	N/A	Lamujia	Show Allele Data
Laoguangtou83	N/A	Laoguangtou83	Show Allele Data
Laohongdao	N/A	Laohongdao	Show Allele Data
Laohuzhong	N/A	Laohuzhong	Show Allele Data
Laozaogu	N/A	Laozaogu	Show Allele Data
Largue	N/A	Largue	Show Allele Data
Lemont	N/A	Lemont	Show Allele Data
Lengshuigu2	N/A	Lengshuigu2	Show Allele Data
Liaojing287	N/A	Liaojing287	Show Allele Data
LimingB	N/A	LimingB	Show Allele Data
Liusha1	N/A	Liusha1	Show Allele Data
Liushizao	N/A	Liushizao	Show Allele Data
Lixingjing	N/A	Lixingjing	Show Allele Data
Longhuamaohu	N/A	Longhuamaohu	Show Allele Data
Lucaihao	N/A	Lucaihao	Show Allele Data
Maguzi	N/A	Maguzi	Show Allele Data
Mamagu	N/A	Mamagu	Show Allele Data
Maweizhan	N/A	Maweizhan	Show Allele Data
Meihualuo	N/A	Meihualuo	Show Allele Data
Mengjiading2	N/A	Mengjiading2	Show Allele Data
Mengjiagao1	N/A	Mengjiagao1	Show Allele Data
MH63	N/A	MH63	Show Allele Data
Minbeiwanxian	N/A	Minbeiwanxian	Show Allele Data
Momi	N/A	Momi	Show Allele Data
Mowanggunei	N/A	Mowanggunei	Show Allele Data
Mugualuo	N/A	Mugualuo	Show Allele Data
Muxiqiu	N/A	Muxiqiu	Show Allele Data
Nangaogu	N/A	Nangaogu	Show Allele Data
Nanjing11	N/A	Nanjing11	Show Allele Data
Nante	N/A	Nante	Show Allele Data
Nantiangangjiu	N/A	Nantiangangjiu	Show Allele Data
Nanxiongzaoyou	N/A	Nanxiongzaoyou	Show Allele Data
Ninghui21	N/A	Ninghui21	Show Allele Data
Nipponbare	N/A	Nipponbare	Show Allele Data
NYZ	N/A	NYZ	Show Allele Data
PeiC122	N/A	PeiC122	Show Allele Data
Qimei	N/A	Qimei	Show Allele Data
Qinghe	N/A	Qinghe	Show Allele Data
Qingsiai16B	N/A	Qingsiai16B	Show Allele Data
Qitoubaigu	N/A	Qitoubaigu	Show Allele Data
Qiuqianbai	N/A	Qiuqianbai	Show Allele Data
Qiyuexian	N/A	Qiyuexian	Show Allele Data
Sanbaili	N/A	Sanbaili	Show Allele Data
Sanlicun	N/A	Sanlicun	Show Allele Data
Sanqishi	N/A	Sanqishi	Show Allele Data
Shufeng101	N/A	Shufeng101	Show Allele Data
Shuiyuan300	N/A	Shuiyuan300	Show Allele Data
Shuyazhan	N/A	Shuyazhan	Show Allele Data
Simiao	N/A	Simiao	Show Allele Data
SLG	N/A	SLG	Show Allele Data
Suidao1	N/A	Suidao1	Show Allele Data
Sujing2	N/A	Sujing2	Show Allele Data
Taidongludao	N/A	Taidongludao	Show Allele Data
Taishanluo	N/A	Taishanluo	Show Allele Data
Taizhong65	N/A	Taizhong65	Show Allele Data
Taizhongxianxuan2	N/A	Taizhongxianxuan2	Show Allele Data
Taizhongzailai1	N/A	Taizhongzailai1	Show Allele Data
TeqingXuanhui	N/A	TeqingXuanhui	Show Allele Data
Tieganwu	N/A	Tieganwu	Show Allele Data
Wanlixian	N/A	Wanlixian	Show Allele Data
Weiguo	N/A	Weiguo	Show Allele Data
Wenxiangluo	N/A	Wenxiangluo	Show Allele Data
Wukezhan	N/A	Wukezhan	Show Allele Data
Wuzidui	N/A	Wuzidui	Show Allele Data
Xiangaizao10	N/A	Xiangaizao10	Show Allele Data
Xiangdao	N/A	Xiangdao	Show Allele Data
Xianggu	N/A	Xianggu	Show Allele Data
Xianghui91269	N/A	Xianghui91269	Show Allele Data
Xiangwanxian1	N/A	Xiangwanxian1	Show Allele Data
Xiangwanxian3	N/A	Xiangwanxian3	Show Allele Data
Xiangzaoxian7	N/A	Xiangzaoxian7	Show Allele Data
Xiaobaimi	N/A	Xiaobaimi	Show Allele Data
Xiaohonggu	N/A	Xiaohonggu	Show Allele Data
Xibaizhan	N/A	Xibaizhan	Show Allele Data
Xingguo	N/A	Xingguo	Show Allele Data
Xinmaxian	N/A	Xinmaxian	Show Allele Data
Xiushui115	N/A	Xiushui115	Show Allele Data
Xuanenchangtan	N/A	Xuanenchangtan	Show Allele Data
Xuguluo	N/A	Xuguluo	Show Allele Data
Yangdao2	N/A	Yangdao2	Show Allele Data
Yangkeluo	N/A	Yangkeluo	Show Allele Data
Yanshuichi	N/A	Yanshuichi	Show Allele Data
Yenicanghua	N/A	Yenicanghua	Show Allele Data
Yizhixiang	N/A	Yizhixiang	Show Allele Data
Youmangzaojing	N/A	Youmangzaojing	Show Allele Data
Youzhan	N/A	Youzhan	Show Allele Data
Yuyanluo	N/A	Yuyanluo	Show Allele Data
Zaoshunonghu6	N/A	Zaoshunonghu6	Show Allele Data
Zaoshuxianghei	N/A	Zaoshuxianghei	Show Allele Data
Zaoxian240	N/A	Zaoxian240	Show Allele Data
Zegu	N/A	Zegu	Show Allele Data
ZH11	N/A	ZH11	Show Allele Data
Zhenshan97B	N/A	Zhenshan97B	Show Allele Data
Zhenxian232	N/A	Zhenxian232	Show Allele Data
Zhonghua8	N/A	Zhonghua8	Show Allele Data
Zhonglou1	N/A	Zhonglou1	Show Allele Data
Zhongnong4	N/A	Zhongnong4	Show Allele Data
ZhuzhenB	N/A	ZhuzhenB	Show Allele Data
Ziluo	N/A	Ziluo	Show Allele Data
Zimi	N/A	Zimi	Show Allele Data
ZS97	N/A	ZS97	Show Allele Data

Markers (0)

QTL (0)

Phenotype Data (180)

Download Phenotype Data

Traits (1)

Trait Name	Trait Ontology Accession	Phenotype Measurement
grain length	TO:0000734	PATO:0000574; decreased length; UO:0000016; ECO:0000176; inferred from visible phenotype; Measurement of the average length of 10 grains for each line

Database Cross-References (1)

Gramene Literature 51253