Experiment "The Population Structure of African Cultivated Rice Or..."

Title	The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elavated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation
Design	198 O. glaberrima and 9 O. sativa accessions were evaluated using 93 SSR markers.
Polymorphism Type (1)	SSR
Allele Scoring Protocol (1)	PCR products were size separated using polyacrylamine gel electrophoresis and detected using silver staining or using an ABI fluorescent detection system. Alleles were scored using Genotyper software.
PI(s)	McCouch-S-R
Comments	Reference: Semon et al., 2005.

Germplasm (207)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
6165TOG	6165TOG	6165TOG	WARDA	Show Allele Data
Argungu(1)	5680TOG	5680TOG	WARDA	Show Allele Data
Babba Fari(1)	5486TOG	5486TOG	WARDA	Show Allele Data
Bakin Iri(1)	5324TOG	5324TOG	WARDA	Show Allele Data
Barta Tazo(1)	5384TOG	5384TOG	WARDA	Show Allele Data
Barta Tazo(2)	5385TOG	5385TOG	WARDA	Show Allele Data
Barta Tazo(7)	5497TOG	5497TOG	WARDA	Show Allele Data
Bawku(1)	5588TOG	5588TOG	WARDA	Show Allele Data
Bawku(3)	5596TOG	5596TOG	WARDA	Show Allele Data
Bayawure(2)	5382TOG	5382TOG	WARDA	Show Allele Data
Bayawure(30)	5397TOG	5397TOG	WARDA	Show Allele Data
BG90-2	n/a	Susan McCouch stock	WARDA	Show Allele Data
Biya Gero(1)	5442TOG	5442TOG	WARDA	Show Allele Data
Biyau(2)	5429TOG	5429TOG	WARDA	Show Allele Data
Biyau(3)	5533TOG	5533TOG	WARDA	Show Allele Data
Biyau(Popular)	5566TOG	5566TOG	WARDA	Show Allele Data
Biyegeru	5573TOG	5573TOG	WARDA	Show Allele Data
Cg 171(3)	7174TOG	7174TOG	WARDA	Show Allele Data
Cg 171-1	7173TOG	7173TOG	WARDA	Show Allele Data
CG11	7133TOG	7133TOG	WARDA	Show Allele Data
CG13	7135TOG	7135TOG	WARDA	Show Allele Data
CG14	n/a	Susan McCouch stock	WARDA	Show Allele Data
CG17	n/a	Susan McCouch stock	WARDA	Show Allele Data
CG20	n/a	Susan McCouch stock	WARDA	Show Allele Data
CG35(2)	7145TOG	7145TOG	WARDA	Show Allele Data
CG4	7126TOG	7126TOG	WARDA	Show Allele Data
Damongo(Wild)	5602TOG	5602TOG	WARDA	Show Allele Data
Dan Batta(1)	5641TOG	5641TOG	WARDA	Show Allele Data
Dan Boto(1)	5293TOG	5293TOG	WARDA	Show Allele Data
Dan Dauda 78-94 A	6804TOG	6804TOG	WARDA	Show Allele Data
Dan Gande(1)	5482TOG	5482TOG	WARDA	Show Allele Data
Dan Gashwwa	5307TOG	5307TOG	WARDA	Show Allele Data
Dan Gyaranshe(1)	5422TOG	5422TOG	WARDA	Show Allele Data
Dan Gyaranshe(2)	5423TOG	5423TOG	WARDA	Show Allele Data
Dan Gyaranshe(4)	5457TOG	5457TOG	WARDA	Show Allele Data
Dan Iri 2	5415TOG	5415TOG	WARDA	Show Allele Data
Dan Iri(2)	5447TOG	5447TOG	WARDA	Show Allele Data
Dan Kakale	5500TOG	5500TOG	WARDA	Show Allele Data
Dan Kaushi	5495TOG	5495TOG	WARDA	Show Allele Data
Dan Maiwuya(6)	5390TOG	5390TOG	WARDA	Show Allele Data
Dan Maiwuya(8)	5508TOG	5508TOG	WARDA	Show Allele Data
Dan Manu	5474TOG	5474TOG	WARDA	Show Allele Data
Dan Maruya(1)	5402TOG	5402TOG	WARDA	Show Allele Data
Dckono	n/a	Susan McCouch stock	WARDA	Show Allele Data
Farin Dan Boto	5456TOG	5456TOG	WARDA	Show Allele Data
Gambiaka	n/a	Susan McCouch stock	WARDA	Show Allele Data
Ganye(2)	7432TOG	7432TOG	WARDA	Show Allele Data
Gbagai	5919TOG	5919TOG	WARDA	Show Allele Data
Gbakiah-1	5785TOG	5785TOG	WARDA	Show Allele Data
Gbeke-1(Late)	5775TOG	5775TOG	WARDA	Show Allele Data
Gbeke-2(Early)	5776TOG	5776TOG	WARDA	Show Allele Data
Gbensema	7020TOG	7020TOG	WARDA	Show Allele Data
Gee	5820TOG	5820TOG	WARDA	Show Allele Data
Gidan Galadima(Wild)	6017TOG	6017TOG	WARDA	Show Allele Data
Hakuri Montol(2)	5979TOG	5979TOG	WARDA	Show Allele Data
IB91	5282TOG	5282TOG	WARDA	Show Allele Data
IB92	5283TOG	5283TOG	WARDA	Show Allele Data
IB93	5284TOG	5284TOG	WARDA	Show Allele Data
IG10	7192TOG	7192TOG	WARDA	Show Allele Data
IG15	n/a	Susan McCouch stock	WARDA	Show Allele Data
IR64	RA472	RA472	McCouch Lab	Show Allele Data
IRGC100134	6195TOG	6195TOG	WARDA	Show Allele Data
IRGC100136	6196TOG	6196TOG	WARDA	Show Allele Data
IRGC100136	6197TOG	6197TOG	WARDA	Show Allele Data
IRGC100137	6199TOG	6199TOG	WARDA	Show Allele Data
IRGC100137	6198TOG	6198TOG	WARDA	Show Allele Data
IRGC100149	6202TOG	6202TOG	WARDA	Show Allele Data
IRGC100152	6203TOG	6203TOG	WARDA	Show Allele Data
IRGC100158	6204TOG	6204TOG	WARDA	Show Allele Data
IRGC100160	6205TOG	6205TOG	WARDA	Show Allele Data
IRGC100854	6206TOG	6206TOG	WARDA	Show Allele Data
IRGC100977	6208TOG	6208TOG	WARDA	Show Allele Data
IRGC100978	6209TOG	6209TOG	WARDA	Show Allele Data
IRGC100980	6210TOG	6210TOG	WARDA	Show Allele Data
IRGC100982	6211TOG	6211TOG	WARDA	Show Allele Data
IRGC101836	6218TOG	6218TOG	WARDA	Show Allele Data
IRGC101853	6220TOG	6220TOG	WARDA	Show Allele Data
IRGC101880	6221TOG	6221TOG	WARDA	Show Allele Data
IRGC101884	6222TOG	6222TOG	WARDA	Show Allele Data
IRGC102105	6231TOG	6231TOG	WARDA	Show Allele Data
IRGC102193	6232TOG	6232TOG	WARDA	Show Allele Data
IRGC102195	6234TOG	6234TOG	WARDA	Show Allele Data
IRGC102198	6237TOG	6237TOG	WARDA	Show Allele Data
IRGC102199	6238TOG	6238TOG	WARDA	Show Allele Data
IRGC102200	6239TOG	6239TOG	WARDA	Show Allele Data
IRGC102210	6246TOG	6246TOG	WARDA	Show Allele Data
IRGC102212	6248TOG	6248TOG	WARDA	Show Allele Data
IRGC102215	6251TOG	6251TOG	WARDA	Show Allele Data
IRGC102216	6252TOG	6252TOG	WARDA	Show Allele Data
IRGC102218	6255TOG	6255TOG	WARDA	Show Allele Data
IRGC102225	6265TOG	6265TOG	WARDA	Show Allele Data
IRGC102226	6266TOG	6266TOG	WARDA	Show Allele Data
IRGC102231	6271TOG	6271TOG	WARDA	Show Allele Data
IRGC102232	6272TOG	6272TOG	WARDA	Show Allele Data
IRGC102240	6281TOG	6281TOG	WARDA	Show Allele Data
IRGC102245	6287TOG	6287TOG	WARDA	Show Allele Data
IRGC102251	6292TOG	6292TOG	WARDA	Show Allele Data
IRGC102254	6295TOG	6295TOG	WARDA	Show Allele Data
IRGC102255	6296TOG	6296TOG	WARDA	Show Allele Data
IRGC102258	6301TOG	6301TOG	WARDA	Show Allele Data
IRGC102259	6302TOG	6302TOG	WARDA	Show Allele Data
IRGC102260	6303TOG	6303TOG	WARDA	Show Allele Data
IRGC102261	6304TOG	6304TOG	WARDA	Show Allele Data
IRGC102262	6305TOG	6305TOG	WARDA	Show Allele Data
IRGC102263	6306TOG	6306TOG	WARDA	Show Allele Data
IRGC102264	6307TOG	6307TOG	WARDA	Show Allele Data
IRGC102265	6308TOG	6308TOG	WARDA	Show Allele Data
IRGC102268	6312TOG	6312TOG	WARDA	Show Allele Data
IRGC102269	6313TOG	6313TOG	WARDA	Show Allele Data
IRGC102273	6319TOG	6319TOG	WARDA	Show Allele Data
IRGC102275	6322TOG	6322TOG	WARDA	Show Allele Data
IRGC102277	6324TOG	6324TOG	WARDA	Show Allele Data
IRGC102278	6325TOG	6325TOG	WARDA	Show Allele Data
IRGC102279	6326TOG	6326TOG	WARDA	Show Allele Data
IRGC102282	6328TOG	6328TOG	WARDA	Show Allele Data
IRGC102283	6329TOG	6329TOG	WARDA	Show Allele Data
IRGC102284	6330TOG	6330TOG	WARDA	Show Allele Data
IRGC102288	6332TOG	6332TOG	WARDA	Show Allele Data
IRGC102289	6334TOG	6334TOG	WARDA	Show Allele Data
IRGC102291	6335TOG	6335TOG	WARDA	Show Allele Data
IRGC102295	6339TOG	6339TOG	WARDA	Show Allele Data
IRGC102299	6343TOG	6343TOG	WARDA	Show Allele Data
IRGC102304	6349TOG	6349TOG	WARDA	Show Allele Data
IRGC102306	6351TOG	6351TOG	WARDA	Show Allele Data
IRGC102308	6354TOG	6354TOG	WARDA	Show Allele Data
IRGC102309	6356TOG	6356TOG	WARDA	Show Allele Data
IRGC102310	6357TOG	6357TOG	WARDA	Show Allele Data
IRGC102312	6360TOG	6360TOG	WARDA	Show Allele Data
IRGC102316	6366TOG	6366TOG	WARDA	Show Allele Data
IRGC102317	6367TOG	6367TOG	WARDA	Show Allele Data
IRGC102483	6461TOG	6461TOG	WARDA	Show Allele Data
IRGC102484	6462TOG	6462TOG	WARDA	Show Allele Data
IRGC102637	7417TOG	7417TOG	WARDA	Show Allele Data
IRGC102649	7418TOG	7418TOG	WARDA	Show Allele Data
Jatau	5548TOG	5548TOG	WARDA	Show Allele Data
Kamo(1)	7404TOG	7404TOG	WARDA	Show Allele Data
Kano(2)	5639TOG	5639TOG	WARDA	Show Allele Data
Kari	5709TOG	5709TOG	WARDA	Show Allele Data
Katsina 6	6154TOG	6154TOG	WARDA	Show Allele Data
Katsina Ala 1	6135TOG	6135TOG	WARDA	Show Allele Data
Katsina Ala(Early) 4	6144TOG	6144TOG	WARDA	Show Allele Data
Katsina Ala(Wild)5	6146TOG	6146TOG	WARDA	Show Allele Data
Kyanga Gumi Karami(2)	5516TOG	5516TOG	WARDA	Show Allele Data
Kyanga(1)	5286TOG	5286TOG	WARDA	Show Allele Data
Kyanga(3)	5470TOG	5470TOG	WARDA	Show Allele Data
Kyanga(9)	5491TOG	5491TOG	WARDA	Show Allele Data
Lac 23	IRGC14957	RA5035	IRRI	Show Allele Data
LG13-1	7105TOG	7105TOG	WARDA	Show Allele Data
LG14	7108TOG	7108TOG	WARDA	Show Allele Data
LG9-2	7103TOG	7103TOG	WARDA	Show Allele Data
Longvel Shendam(1)	5980TOG	5980TOG	WARDA	Show Allele Data
Mahmo	5795TOG	5795TOG	WARDA	Show Allele Data
Mahn	5750TOG	5750TOG	WARDA	Show Allele Data
Mai Kumatu(1)	5555TOG	5555TOG	WARDA	Show Allele Data
Maiwo I	5828TOG	5828TOG	WARDA	Show Allele Data
Manga(2)	5598TOG	5598TOG	WARDA	Show Allele Data
Maywar I	5923TOG	5923TOG	WARDA	Show Allele Data
MG5	7214TOG	7214TOG	WARDA	Show Allele Data
Moroberekan	RA1416	RA1416	McCouch Lab	Show Allele Data
Najaboh(3)	5817TOG	5817TOG	WARDA	Show Allele Data
New Ayoma Local(1)	7401TOG	7401TOG	WARDA	Show Allele Data
New Ayoma Local(2)	7402TOG	7402TOG	WARDA	Show Allele Data
Nipponbare	RA1411	RA1411	McCouch Lab	Show Allele Data
Nyagbo Agodone	5620TOG	5620TOG	WARDA	Show Allele Data
Ond Ayomalocal	7403TOG	7403TOG	WARDA	Show Allele Data
Panyam(Wild) 3	6080TOG	6080TOG	WARDA	Show Allele Data
Pc Dc Kono	n/a	Susan McCouch stock	WARDA	Show Allele Data
Pedikum	6943TOG	6943TOG	WARDA	Show Allele Data
Que(2)	5815TOG	5815TOG	WARDA	Show Allele Data
Rakama(Early)	5552TOG	5552TOG	WARDA	Show Allele Data
Rakin Dan Boto(1)	5435TOG	5435TOG	WARDA	Show Allele Data
Rokchusonecon(1)	5805TOG	5805TOG	WARDA	Show Allele Data
Rokchusonecon(2)	5810TOG	5810TOG	WARDA	Show Allele Data
Sainyihan Daji	5685TOG	5685TOG	WARDA	Show Allele Data
Sali-1	7032TOG	7032TOG	WARDA	Show Allele Data
Saliforeh	n/a	Susan McCouch stock	WARDA	Show Allele Data
Semi-Wild	5666TOG	5666TOG	WARDA	Show Allele Data
Shawhon(2)	5747TOG	5747TOG	WARDA	Show Allele Data
Shendam(2)	5969TOG	5969TOG	WARDA	Show Allele Data
Shendam(Weedy)1	5984TOG	5984TOG	WARDA	Show Allele Data
Silibuy	5892TOG	5892TOG	WARDA	Show Allele Data
SOKPONG(5) Long Panicle	5885TOG	5885TOG	WARDA	Show Allele Data
Sokpong(6)	5887TOG	5887TOG	WARDA	Show Allele Data
T2	n/a	Susan McCouch stock	WARDA	Show Allele Data
Tamba(1)	5438TOG	5438TOG	WARDA	Show Allele Data
Tanba(1)	5453TOG	5453TOG	WARDA	Show Allele Data
Tattara(1)	5479TOG	5479TOG	WARDA	Show Allele Data
Ug14	7262TOG	7262TOG	WARDA	Show Allele Data
UG26 -3	7274TOG	7274TOG	WARDA	Show Allele Data
Wab56-104	n/a	Susan McCouch stock	WARDA	Show Allele Data
Wab56-50	n/a	Susan McCouch stock	WARDA	Show Allele Data
Wab638-1	n/a	Susan McCouch stock	WARDA	Show Allele Data
Wenchi(Upland)	5603TOG	5603TOG	WARDA	Show Allele Data
Wurno(2)	5673TOG	5673TOG	WARDA	Show Allele Data
Yandev(1)	5949TOG	5949TOG	WARDA	Show Allele Data
Yandev(2)	5950TOG	5950TOG	WARDA	Show Allele Data
Yandev(Weedy)1	6126TOG	6126TOG	WARDA	Show Allele Data
Yar Butuka	5467TOG	5467TOG	WARDA	Show Allele Data
Yar Karengeshe	5440TOG	5440TOG	WARDA	Show Allele Data
Yar Mamman(1)	5420TOG	5420TOG	WARDA	Show Allele Data
Ys168	n/a	Susan McCouch stock	WARDA	Show Allele Data
Ys179	n/a	Susan McCouch stock	WARDA	Show Allele Data
Ys205-1	n/a	Susan McCouch stock	WARDA	Show Allele Data
Ys230	n/a	Susan McCouch stock	WARDA	Show Allele Data
Ys351	n/a	Susan McCouch stock	WARDA	Show Allele Data
Zaki Biam-Yande(Wild)1	6193TOG	6193TOG	WARDA	Show Allele Data
Zaria(2)	5635TOG	5635TOG	WARDA	Show Allele Data

Marker Name
Markers 1 to 25 of 93. of 4 \| Next
RM1	Show Allele Data
RM101	Show Allele Data
RM103	Show Allele Data
RM105	Show Allele Data
RM106	Show Allele Data
RM109	Show Allele Data
RM11	Show Allele Data
RM112	Show Allele Data
RM116	Show Allele Data
RM118	Show Allele Data
RM119	Show Allele Data
RM121	Show Allele Data
RM124	Show Allele Data
RM125	Show Allele Data
RM13	Show Allele Data
RM132	Show Allele Data
RM133	Show Allele Data
RM135	Show Allele Data
RM136	Show Allele Data
RM138	Show Allele Data
RM14	Show Allele Data
RM142	Show Allele Data
RM144	Show Allele Data
RM147	Show Allele Data
RM153	Show Allele Data