Experiment "Genetic structure and diversity in Oryza sativa L."

Title	Genetic structure and diversity in Oryza sativa L.
Design	234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica
Polymorphism Type (1)	SSR
Allele Scoring Protocol (1)	PCR products were size separated by capillary elctrophoresis using ABI 3700 DNA analyzer; SSRs were analysed with GenScan 3.1.2 software and scored with Genotyper 2.5 software.
PI(s)	McCouch-S-R, Tai-T-H
Comments	Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005.

Germplasm (234)

Accession	Acc. Number	Seed Stock (Source)	Stock Source
Aedal	IRGC55441	RA4969	IRRI	Show Allele Data
Agostano	PI400344	RA5360	NSGC	Show Allele Data
Ai-Chiao-Hong	IRGC51250	RA4967	IRRI	Show Allele Data
Aichi Asahi	IRGC40252	RA4954	IRRI	Show Allele Data
Arang	IRGC43322	RA4949	IRRI	Show Allele Data
ARC 10177	IRGC12386	RA4994	IRRI	Show Allele Data
ARC 10352	IRGC12440	RA4981	IRRI	Show Allele Data
ARC 13829	IRGC42469	RA4947	IRRI	Show Allele Data
ARC 7229	IRGC12331	RA5007	IRRI	Show Allele Data
Arias	IRGC43325	RA4951	IRRI	Show Allele Data
Asse Y Pung	CIor461	RA5333	NSGC	Show Allele Data
Baber	IRGC33984	RA4941	IRRI	Show Allele Data
Badkalamkati	IRGC45011	RA4991	IRRI	Show Allele Data
Baghlani Nangarhar	IRGC58266	RA4975	IRRI	Show Allele Data
Baguamon 14	IRGC6590	RA4896	IRRI	Show Allele Data
Basmati	PI385418	RA5325	NSGC	Show Allele Data
Basmati 1	IRGC27798	RA4933	IRRI	Show Allele Data
Basmati 217	IRGC53637	RA4993	IRRI	Show Allele Data
Beonjo	IRGC55457	RA4971	IRRI	Show Allele Data
Bhadoia 233	IRGC6541	IRGC6541	IRRI	Show Allele Data
Bico Branco	IRGC38994	RA4950	IRRI	Show Allele Data
Binulawan	IRGC26872	RA4871	IRRI	Show Allele Data
BJ1	IRGC45195	RA5345	IRRI	Show Allele Data
Black Gora	IRGC40275	RA5003	IRRI	Show Allele Data
Blue Rose	CIor1962	RA5124	NSGC	Show Allele Data
Byakkou Y 5006	CIor12248	RA5400	NSGC	Show Allele Data
CAAWA/Fortuna 6-103-15	IRGC5441	RA5026	IRRI	Show Allele Data
Canella De Ferro	IRGC50448	RA4962	IRRI	Show Allele Data
Carolina Gold	IRGC1723	RA4876	IRRI	Show Allele Data
Cere Air	IRGC43369	RA4953	IRRI	Show Allele Data
Chahora 144	IRGC27869	RA4934	IRRI	Show Allele Data
Champa Tong 54	IRGC30238	RA4936	IRRI	Show Allele Data
Chau	IRGC56036	RA4974	IRRI	Show Allele Data
Chhote Dhan	IRGC58930	RA4978	IRRI	Show Allele Data
Chiem Chanh	IRGC10214	RA4928	IRRI	Show Allele Data
Chinese	PI431222	RA5295	NSGC	Show Allele Data
Chitraj(DA23)	IRGC6208	IRGC6208	IRRI	Show Allele Data
Chodongji	IRGC55471	RA4972	IRRI	Show Allele Data
Chuan 4	IRGC17052	RA5027	IRRI	Show Allele Data
Cicih Beton	IRGC43372	RA4955	IRRI	Show Allele Data
CO18	IRGC6331	RA4895	IRRI	Show Allele Data
CO25	IRGC3697	RA4879	IRRI	Show Allele Data
CS-M3	CIor9675	RA5051	NSGC	Show Allele Data
Cuba 65	IRGC10658	RA5015	IRRI	Show Allele Data
DA1	IRGC45624	RA4964	IRRI	Show Allele Data
DA11	IRGC6046	IRGC6046	IRRI	Show Allele Data
DA13	IRGC5857	RA4887	IRRI	Show Allele Data
DA16	IRGC6245	RA5038	IRRI	Show Allele Data
DA1A	RA4890	RA4890	McCouch Lab	Show Allele Data
DA5	IRGC5855	RA4886	IRRI	Show Allele Data
DA7	IRGC5809	RA4884	IRRI	Show Allele Data
DA9	IRGC5854	RA4885	IRRI	Show Allele Data
Dam	IRGC23710	RA5036	IRRI	Show Allele Data
Darmali	IRGC27630	RA4930	IRRI	Show Allele Data
Davao	IRGC8244	RA4901	IRRI	Show Allele Data
De Abril	IRGC50463	RA4965	IRRI	Show Allele Data
Dee Geo Woo Gen	PI279131	RA5344	NSGC	Show Allele Data
Dhala Shaitta	PI180060	RA5361	NSGC	Show Allele Data
Dhola Aman	IRGC8341	IRGC8341	IRRI	Show Allele Data
Dholi Boro	IRGC27513	RA4984	IRRI	Show Allele Data
Dom Sufid	IRGC12880	RA4929	IRRI	Show Allele Data
Dourado Agulha	IRGC3297	RA4877	IRRI	Show Allele Data
Dourado Precoce	IRGC26011	RA4868	IRRI	Show Allele Data
Dular	IRGC32561	RA4985	IRRI	Show Allele Data
DV85	IRGC8839	RA5323	IRRI	Show Allele Data
DZ78	IRGC8555	RA5321	IRRI	Show Allele Data
Early Wataribune	CIor9738	RA5319	NSGC	Show Allele Data
EH-1A-Chiu	IRGC8241	RA4899	IRRI	Show Allele Data
Firooz	PI584569	RA4952	NSGC	Show Allele Data
Fortuna	CIor1344	RA5045	NSGC	Show Allele Data
FR13 A	IRGC6144	RA4891	IRRI	Show Allele Data
Gerdeh	IRGC32300	RA4935	IRRI	Show Allele Data
Geumobyeo	PI597018	RA5394	NSGC	Show Allele Data
Gharib	IRGC32303	RA4937	IRRI	Show Allele Data
Ghati Kamma Nangarhar	IRGC58278	RA4976	IRRI	Show Allele Data
Gie 57	IRGC8231	RA4870	IRRI	Show Allele Data
Gogo Lempuk	IRGC43394	RA4957	IRRI	Show Allele Data
Gotak Gatik	IRGC43397	RA4959	IRRI	Show Allele Data
Guan-Yin-Tsan	IRGC51300	RA4968	IRRI	Show Allele Data
Gundil Kuning	IRGC16428	RA5297	IRRI	Show Allele Data
Gyehwa 3	PI584598	RA4997	NSGC	Show Allele Data
Haginomae Mochi	IRGC2540	RA5020	IRRI	Show Allele Data
Heukgyeong	IRGC55530	RA4973	IRRI	Show Allele Data
Honduras	IRGC1717	RA5129	IRRI	Show Allele Data
Hsia-Chioh-Keh-Tu	IRGC8240	RA4898	IRRI	Show Allele Data
Hu Lo Tao	IRGC8264	RA4906	IRRI	Show Allele Data
I-Geo-Tze	IRGC120	RA5354	IRRI	Show Allele Data
IAC 25	IRGC19642	RA4982	IRRI	Show Allele Data
Iguape Cateto	IRGC4122	RA5023	IRRI	Show Allele Data
Il Is Air	IRGC43400	RA5025	IRRI	Show Allele Data
IR36	IRGC30416	RA5352	IRRI	Show Allele Data
IR8	PI312627	RA5373	NSGC	Show Allele Data
IRAT177	GID 58752	RA5348	IRRI	Show Allele Data
IRGA409	IRGC77483	RA5279	IRRI	Show Allele Data
Jambu	IRGC17757	RA5353	IRRI	Show Allele Data
Jaya	PI430261	RA5289	NSGC	Show Allele Data
JC1	IRGC9091	RA4917	IRRI	Show Allele Data
JC101	IRGC9060	RA4912	IRRI	Show Allele Data
JC111	IRGC9062	RA4913	IRRI	Show Allele Data
JC120	IRGC9178	RA4926	IRRI	Show Allele Data
JC148	IRGC9069	RA4914	IRRI	Show Allele Data
JC149	IRGC9070	RA4915	IRRI	Show Allele Data
JC157	IRGC9179	RA4916	IRRI	Show Allele Data
JC73-4	IRGC9115	RA4918	IRRI	Show Allele Data
JC91	IRGC9177	RA4925	IRRI	Show Allele Data
JC92	IRGC9176	RA4923	IRRI	Show Allele Data
JC93	IRGC9175	RA4922	IRRI	Show Allele Data
Jhona 349	IRGC6307	RA4979	IRRI	Show Allele Data
Jouiku 393	RA5313	RA5313	DBNRRC	Show Allele Data
Jumali	IRGC9542	RA4927	IRRI	Show Allele Data
K-65 Laat	PI276884	RA5375	NSGC	Show Allele Data
Kalamkati	IRGC45975	RA4963	IRRI	Show Allele Data
Kalukantha	IRGC7755	RA4983	IRRI	Show Allele Data
Kamenoo	PI403629	RA4990	NSGC	Show Allele Data
Kaniranga	IRGC9145	RA5014	IRRI	Show Allele Data
Karasukara-Surankasu	IRGC8196	RA5022	IRRI	Show Allele Data
Kasalath	HO1195	RA5339	Kyushu University	Show Allele Data
Kaw Luyoeng	IRGC27716	RA4931	IRRI	Show Allele Data
Keriting Tingii	IRGC19972	RA5028	IRRI	Show Allele Data
Khao Dawk Mali 105	IRGC27748	RA4878	IRRI	Show Allele Data
Khao Gaew	IRGC24224	RA5033	IRRI	Show Allele Data
Khao Hawm	IRGC24225	RA5030	IRRI	Show Allele Data
Kiang-Chou-Chiu	IRGC8180	RA5017	IRRI	Show Allele Data
Kibi	IRGC5310	RA4989	IRRI	Show Allele Data
Kinastano	IRGC3782	RA412	IRRI	Show Allele Data
Kitrana 508	IRGC12793	RA5004	IRRI	Show Allele Data
Koshihikari	IRGC10907	RA5337	IRRI	Show Allele Data
Kotobuki Mochi	IRGC2545	RA4882	IRRI	Show Allele Data
KU115	IRGC15046	RA5294	IRRI	Show Allele Data
Kun-Min-Tsieh-Hunan	IRGC8195	RA5011	IRRI	Show Allele Data
L-202	IRGC66292	RA5001	IRRI	Show Allele Data
Lac 23	IRGC14957	RA5035	IRRI	Show Allele Data
LaCrosse	CIor8985	RA5061	NSGC	Show Allele Data
Lageado	IRGC50490	RA4966	IRRI	Show Allele Data
Lal Aman	IRGC46202	RA4956	IRRI	Show Allele Data
Lemont	IRGC66756	RA4998	IRRI	Show Allele Data
Leung Pratew	IRGC27762	RA4932	IRRI	Show Allele Data
Luk Takhar	IRGC58286	RA4977	IRRI	Show Allele Data
Macan Binundok	IRGC8245	RA4902	IRRI	Show Allele Data
Maintmolotsy 1226	IRGC11010	RA4995	IRRI	Show Allele Data
Makalioka-34	IRGC6087	RA4892	IRRI	Show Allele Data
Mansaku	IRGC8191	RA5016	IRRI	Show Allele Data
Mehr	IRGC12883	RA4890	IRRI	Show Allele Data
Ming Hui	PI602626	RA5369	NSGC	Show Allele Data
Miriti	IRGC25901	RA4970	IRRI	Show Allele Data
Moroberekan	PI434632	RA5342	NSGC	Show Allele Data
MTU9	IRGC7919	RA4867	IRRI	Show Allele Data
Mudgo	IRGC6663	RA5282	IRRI	Show Allele Data
N12	IRGC6298	RA4894	IRRI	Show Allele Data
N22	IRGC6264	RA4999	IRRI	Show Allele Data
Nabeshi	IRGC8269	RA4909	IRRI	Show Allele Data
Nep Hoa Vang	IRGC40748	RA4945	IRRI	Show Allele Data
NHTA 10	IRGC191	RA4873	IRRI	Show Allele Data
Nigro Apiculata	PI439616	RA5362	NSGC	Show Allele Data
Norin 20	IRGC418	RA5302	IRRI	Show Allele Data
Nova	CIor9459	RA5056	NSGC	Show Allele Data
NPE 253	IRGC38690	RA4942	IRRI	Show Allele Data
NPE 417	IRGC38692	RA4944	IRRI	Show Allele Data
NPE 826	IRGC38694	RA4946	IRRI	Show Allele Data
NPE 835	IRGC38696	RA4924	IRRI	Show Allele Data
NPE 844	IRGC38698	RA4948	IRRI	Show Allele Data
O-Luen-Cheung	IRGC8179	RA5018	IRRI	Show Allele Data
Oiran	IRGC8257	RA4903	IRRI	Show Allele Data
Oro	PI439118	RA5317	NSGC	Show Allele Data
Oryzica Llanos 5	PI584668	RA5298	NSGC	Show Allele Data
OS6	PI458474	RA5364	NSGC	Show Allele Data
Ostiglia	CIor8	RA5314	NSGC	Show Allele Data
Padi Boenor	IRGC9147	RA4920	IRRI	Show Allele Data
Padi Kasalle	IRGC8261	RA4905	IRRI	Show Allele Data
Pagaiyahan	IRGC8267	RA5013	IRRI	Show Allele Data
Pankhari 203	IRGC5999	RA4888	IRRI	Show Allele Data
Pao-Tou-Hung	IRGC51400	RA4992	IRRI	Show Allele Data
Pappaku	IRGC8268	RA4908	IRRI	Show Allele Data
Patnai 23	IRGC46531	RA4958	IRRI	Show Allele Data
Pato De Gallinazo	PI392542	RA5363	NSGC	Show Allele Data
Peh-Kuh	IRGC8238	RA5012	IRRI	Show Allele Data
Peh-Kuh-Tsao-Tu	IRGC8237	RA5009	IRRI	Show Allele Data
Peh-Ni-Nuo	IRGC8266	RA4907	IRRI	Show Allele Data
Pelita Janggut	IRGC43540	RA4986	IRRI	Show Allele Data
Phudugey	IRGC32399	RA4939	IRRI	Show Allele Data
Pin Kaeo	IRGC5803	RA4883	IRRI	Show Allele Data
Pin Tawng	IRGC40673	RA4943	IRRI	Show Allele Data
Popot 165	IRGC43545	RA4987	IRRI	Show Allele Data
Pratao	IRGC7937	RA4866	IRRI	Show Allele Data
PTB9	IRGC6274	RA4889	IRRI	Show Allele Data
Rathuwee	IRGC8952	RA4911	IRRI	Show Allele Data
Rexoro	IRGC1715	RA4875	IRRI	Show Allele Data
Rikuto Kemochi	IRGC2719	RA5024	IRRI	Show Allele Data
Romeo	PI433512	RA5371	NSGC	Show Allele Data
RT 1031-69	IRGC15092	RA5031	IRRI	Show Allele Data
RTS12	IRGC8234	RA4897	IRRI	Show Allele Data
RTS14	IRGC8178	RA4961	IRRI	Show Allele Data
RTS4	IRGC8177	RA5039	IRRI	Show Allele Data
RTSE5	IRGC8233	RA4919	IRRI	Show Allele Data
S4542A3-49B-2B12	CIor9187	RA5046	NSGC	Show Allele Data
S624(AC 398)	IRGC8896	IRGC8896	IRRI	Show Allele Data
Saturn	CIor9540	RA5064	NSGC	Show Allele Data
Seratoes Hari	IRGC8260	RA4904	IRRI	Show Allele Data
Shai-Kuh	IRGC8197	RA5034	IRRI	Show Allele Data
Shan Kiu Ju	IRGC1154	RA5032	IRRI	Show Allele Data
Shinriki	CIor1642	RA5327	NSGC	Show Allele Data
Shoemed	PI392539	RA5123	NSGC	Show Allele Data
Short Grain	IRGC5075	RA5019	IRRI	Show Allele Data
Shuang-Chiang	IRGC8242	RA4900	IRRI	Show Allele Data
Sinaguing	IRGC3829	RA5359	IRRI	Show Allele Data
Sinampaga Selection	IRGC3967	RA5396	IRRI	Show Allele Data
Sintane Diofor	IRGC5418	RA4881	IRRI	Show Allele Data
Som Cau 70A	IRGC8227	RA5021	IRRI	Show Allele Data
Sultani	CIor1658	RA5356	NSGC	Show Allele Data
Suweon 362	PI597021	RA5338	NSGC	Show Allele Data
T1	IRGC6294	RA4893	IRRI	Show Allele Data
T26	IRGC46768	RA4960	IRRI	Show Allele Data
Ta Hung Ku	IRGC1107	RA5029	IRRI	Show Allele Data
Ta Mao Tsao	IRGC8194	RA5010	IRRI	Show Allele Data
Taducan	PI280681	RA5374	NSGC	Show Allele Data
Taichung Native 1	IRGC105	RA4872	IRRI	Show Allele Data
Tainan Iku 487	PI215936	RA5286	NSGC	Show Allele Data
Taipei 309	PI366153	RA5397	NSGC	Show Allele Data
Tam Cau-9A	IRGC8228	RA5037	IRRI	Show Allele Data
Tchampa	IRGC32362	RA4938	IRRI	Show Allele Data
TD2	IRGC9148	RA4921	IRRI	Show Allele Data
TD25	IRGC9146	IRGC9146	IRRI	Show Allele Data
Teqing	PI536047	RA5130	NSGC	Show Allele Data
TKM6	IRGC237	RA5381	IRRI	Show Allele Data
Tondok	CIor2584	RA5367	NSGC	Show Allele Data
Trembese	IRGC43675	RA4988	IRRI	Show Allele Data
Tsipala 421	IRGC10989	RA4996	IRRI	Show Allele Data
V-B6616A4-22-BK-5-4	CIor 9881	RA5272	NSGC	Show Allele Data
Vary Vato-426	IRGC10964	RA5000	IRRI	Show Allele Data
WC6	CIor5309	RA5288	NSGC	Show Allele Data
Wells	RA5304	RA5304	McCouch Lab	Show Allele Data
Yelaik Meedon	IRGC33888	RA4940	IRRI	Show Allele Data
Zhe 733	PI629016	RA5127	NSGC	Show Allele Data
Zhenshan 2	PI602624	RA5318	NSGC	Show Allele Data

Marker Name
Markers 1 to 25 of 169. of 7 \| Next
OSR13	Show Allele Data
RM1	Show Allele Data
RM104	Show Allele Data
RM105	Show Allele Data
RM106	Show Allele Data
RM108	Show Allele Data
RM109	Show Allele Data
RM11	Show Allele Data
RM112	Show Allele Data
RM116	Show Allele Data
RM1167	Show Allele Data
RM118	Show Allele Data
RM1189	Show Allele Data
RM119	Show Allele Data
RM120	Show Allele Data
RM122	Show Allele Data
RM124	Show Allele Data
RM125	Show Allele Data
RM13	Show Allele Data
RM132	Show Allele Data
RM133	Show Allele Data
RM1359	Show Allele Data
RM136	Show Allele Data
RM1362	Show Allele Data
RM1381	Show Allele Data