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| Map Set Name: |
Gramene IRGSP Assm 2005 |
[ Show Only This Set ] |
| Abbreviated Name: |
Gramene IRGSP Assm 2005 |
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| Accession ID: |
irgspv4 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Sequence |
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| Map Units: |
bp |
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| Published On: |
07 October, 2005 |
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| Map Set Name: |
Class I SSR (93-11) 2005 |
[ Show Only This Set ] |
| Abbreviated Name: |
Class I SSR (93-11) 2005 |
[ Download Map Set Data ] |
| Accession ID: |
wig2005c |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Sequence |
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| Map Units: |
bp |
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| Published On: |
30 August, 2005 |
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| Map Set Name: |
Class I SSR (IRGSP) 2005 |
[ Show Only This Set ] |
| Abbreviated Name: |
Class I SSR (IRGSP) 2005 |
[ Download Map Set Data ] |
| Accession ID: |
wig2005b |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Sequence |
[ View Map Type Info ] |
| Map Units: |
bp |
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| Published On: |
30 August, 2005 |
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| Map Set Name: |
Class I SSR (TIGR) 2005 |
[ Show Only This Set ] |
| Abbreviated Name: |
Class I SSR (TIGR) 2005 |
[ Download Map Set Data ] |
| Accession ID: |
wig2005a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Sequence |
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| Map Units: |
bp |
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| Published On: |
31 August, 2005 |
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| Map Set Name: |
JRGP RFLP 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
JRGP RFLP 2000 |
[ Download Map Set Data ] |
| Accession ID: |
jrgp-rflp-2000 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
23 October, 2002 |
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Description:
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This is an updated version of the map reported by Kurata et al. (1994) and Harushima et al. (1998). It uses an F2 population of 186 plants from a cross between the cultivars Nipponbare (japonica) and Kasalath (indica). A total of 3267 markers were located covering 1530.4 cM. Marker names ending with the letter 'S' indicate that the 3' UTR of a cDNA fragment was used as a probe rather than the whole insert. The centromere position of chromosome 10 has been updated to reflect the new estimate given by Cheng et al. (2001). |
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| Map Set Name: |
IRMI 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRMI 2003 |
[ Download Map Set Data ] |
| Accession ID: |
irmi-2003 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
09 December, 2002 |
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Description:
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Electronic PCR (e-PCR) was used to align 1825 newly-developed as well as 217 previously-reported SSR markers for rice to 3284 sequenced rice BACs and PACs. The positions of the SSR markers are reported relative to RFLP and STS markers on the JRGP RFLP 2000 map. |
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| Map Set Name: |
IGCN 1998 |
[ Show Only This Set ] |
| Abbreviated Name: |
IGCN 1998 |
[ Download Map Set Data ] |
| Accession ID: |
igcn-1998 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
30 March, 2005 |
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Description:
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This map was developed by the Institute of Genetics, Chinese Academy of Sciences. It is derived from a doubled-haploid inter-subspecific cross between indica variety ZhaiYeQing 8 and japonica variety JingXi 17. The map consists of 276 RFLP, 34 RAPD, 89 SSR, 10 AFLP, 10 TAS, and 9 isozyme markers. |
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| Map Set Name: |
CIAT SSR 2006 |
[ Show Only This Set ] |
| Abbreviated Name: |
CIAT SSR 2006 |
[ Download Map Set Data ] |
| Accession ID: |
lom2006 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
16 February, 2006 |
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Description:
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Map shows triplets of SSRs spaced evenly (~15 cM) throughout the rice genome developed by Mathias Lorieux and his group at CIAT.
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| Map Set Name: |
KRGRP 1998 |
[ Show Only This Set ] |
| Abbreviated Name: |
KRGRP 1998 |
[ Download Map Set Data ] |
| Accession ID: |
krgrp-1998 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 1998 |
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Description:
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This is the map of the Korean Rice Genome Research Program. It was derived from a population of 164 RI lines developed via single-seed descent from a cross between Milyang 23 (tongil type) and Gihobyeo (japonica type). It integrates 231 AFLP, 212 RFLP, 86 SSLP (SSR), five isozymes, and two morphological markers. |
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| Map Set Name: |
Hokkaido Morphological 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
Morph 2000 |
[ Download Map Set Data ] |
| Accession ID: |
morph-2000 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 January, 2000 |
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Description:
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This is the most up-to-date version of the classical linkage map of rice developed by Kinoshita (1998) from morphological mutant stocks. Since the last published version, Ssi1 and d61 have been added to chromosome 1, dl on chromosome 3 was changed to dl1 and eui on chromosome 5 was changed to eui1. |
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| Map Set Name: |
TTU CTIR 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
TTU CTIR 2000 |
[ Download Map Set Data ] |
| Accession ID: |
ctir |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
11 August, 2000 |
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Description:
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The mapping population was a set of 154 doubled-haploid lines derived from a cross between IR62266-42-6-2 x CT9993-5-10-1-M. CT9993 was originally developed at CIAT from a complex cross involving primarily African upland varieties (some japonica background in pedigree), whereas IR62266, a lowland indica, was developed at IRRI. A total of 315 markers (145 RFLP, 158 AFLP, and 12 SSR) were mapped at a LOD threshold of 3.0. The total map length was 1788 cM; the average distance between two markers 6 cM. |
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| Map Set Name: |
TTU IRIR 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
TTU IRIR 2000 |
[ Download Map Set Data ] |
| Accession ID: |
irir |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
20 August, 2000 |
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Description:
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A subset of 166 RILs, chosen randomly from a population of 475 lines derived from a cross between two advanced breeding lines, IR58821-23-B-1-2-1 and IR52561-UBN-1-1-2, was used as the mapping population. The RILs were developed by single-seed descent to the F7 generation at IRRI. Both parentals were indica types. A total of 399 markers (96 RFLP and 303 AFLP) were mapped at an average distance of 5 cM between markers. The total map distance was 2022 cM with a LOD threshold of 3.0. |
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| Map Set Name: |
Niigata RFLP 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
Niigata RFLP 2000 |
[ Download Map Set Data ] |
| Accession ID: |
fuy2000a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 2000 |
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Description:
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The population of 202 F2 progeny was derived from an indica/japonica cross between Korean variety Milyang 23 and Japanese variety Akihikari. A total of distance of 1355 cM was mapped using 119 RFLP markers. Except for chromosomes 1 and 4, segregation distortions were detected in a total of 16 chromosome regions. Skew in favor of indica alleles was recognized on chromosomes 2 and 3 (two regions; 5, 6, 9 and 11 (two regions); and 12 (two regions). Skew in favor of japonica alleles was found on chromosomes 7, 8 and 10 (two regions). An increase of heterozygote was detected on chromosomes 2 and 9. |
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| Map Set Name: |
Cornell SSR 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell SSR 2001 |
[ Download Map Set Data ] |
| Accession ID: |
cu-dh-2001 |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 August, 2001 |
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Description:
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The mapping population consists of doubled haploid lines derived via anther culture from an inter subspecific cross between indica cultivar IR64 and tropical japonica cultivar Azucena. Out of the original 135 lines, a subset of 96 were randomly selected for mapping. Using MAPMAKER 2.0 software, markers with LOD > 2.0 were integrated into the framework maps and those with LOD < 2.0 were assigned to the most likely intervals. Centromere positions were estimated from Singh et al. (1996) and Cheng et al. (2001). |
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| Map Set Name: |
HNAES MIL23/Aki RI QTL 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
HNAES MIL23/Aki RI QTL 2001 |
[ Download Map Set Data ] |
| Accession ID: |
yat2001a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 2001 |
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Description:
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A recombinant inbred line (RIL) H8 from a RIL population consisting of 191 lines was derived from the cross of Milyang23/Akihikari. Milyang23, which is an indica semi-dwarf Korean cultivar, was often used in Japan as the parental strain for the breeding of high yielding rice cultivar. Akihikari is a japonica cultivar with a large number of panicles per plant and a relatively high yield. The genotypes of 74 individual rice plants with 7 heterozygous regions including short arm of chr-1 were determined using 41 RFLP markers. Nine of 11 dominant markers were found to be homozygous. Therefore 30 co-dominant and 2 dominant markers were used to construct an RFLP map. |
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| Map Set Name: |
Aberdeen Bala/Azu QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
Aberdeen Bala/Azu QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
pra2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 January, 2002 |
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Description:
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An F6 recombinant inbred population consisting of 205 lines was developed by the single-seed descent method from a cross between Bala/Azucena. A linkage map contained 101 RFLP and 34 AFLP markers and total map distance was 1680 cM. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Dr. A. H. Price. |
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| Map Set Name: |
TTU IR58821/IR52561 QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
TTU IR58821/IR52561 QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
kaa2002b |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
22 February, 2002 |
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Description:
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A subset of 166 RILs, chosen randomly from a population of 475 lines derived from a cross between two advanced breeding lines, IR58821-23-B-1-2-1 and IR52561-UBN-1-1-2, was used as the mapping population. The RILs were developed by single-seed descent to the F7 generation at IRRI. Both parentals were indica types. A total of 399 markers (96 RFLP and 303 AFLP) were mapped at an average distance of 5 cM between markers. The total map distance was 2022 cM with a LOD threshold of 3.0. |
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| Map Set Name: |
TKU Integrated QTL 2002 |
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| Abbreviated Name: |
TKU Integrated QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
tot2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
28 February, 2002 |
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Description:
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This integrated genetic map was obtained using JoinMap software version 2.0, based on three separate populations and maps. The final integrated map included 298 markers: 96 RFLPs, 166 SSLPs, seven SSCPs, 16 AFLPs, one STS, seven RGAs, two RAPDs, two BAC ends and one YAC end, with an average distance of 4.9 cM between markers. For three mapping populations, the first was the F1-derived doubled haploid lines (DHLs) from a cross between IR49830-7-1-2-2 [IR49830; a submergence-tolerant breeding line] and CT6241-17-1-5-1 [CT6241; a submergence intolerant line]. This population consists of 65 DHLs and was developed using an anther culture method. The second population, derived from the cross between FR13A (an Indian land race cultivar and one of the most submergence-tolerant lines) and CT6241, consists of 172 recombinant inbred lines (RILs). This population was developed via single seed descent (SSD) at IRRI. The third population consists of 188 F2 plants developed from a cross between Jao Hom Nin (a black rice with moderate tolerance to submergence) and Khaow Dawk Mali 105 (KDML105; an aromatic traditional cultivar from Thailand but that is intolerant of submergence). A 1235 cM-linkage map of the DHLs was constructed using 105 markers including 72 RFLPs, 13 SSLPs, two randon amplified polymorphic DNAs (RAPDs) and 18 AFLPs. The RIL linkage map was constructed using 183 markers including 46 RFLPs, 128 SSLPs, four single stranded conformation polymorphisms (SSCPs), one AFLP, one sequence tag site (STS), two bacterial artificial chromosome (BAC) ends, and one yeast artificial chromosome (YAC) end. The F2 linkage map consisted of 111 markers including 99 SSLPs, two SSCPs, three STSs and seven resistance gene analogue polymorphisms (RGAPs). |
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| Map Set Name: |
JNARC Noe29/Chu32 F3 QTL 2002 |
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| Abbreviated Name: |
JNARC Noe29/Chu32 F3 QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
zek2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
31 March, 2002 |
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Description:
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A F3 population consisting of 149 lines was derived from the cross Norin29/Chubu32. A linkage map consisting of 36 RFLP markers was constructed and covered 327 cM on six chromosomes. |
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| Map Set Name: |
Brazil BG90-2/RS16 QTL 2002 |
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| Abbreviated Name: |
Brazil BG90-2/RS16 QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
brc2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
31 May, 2002 |
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Description:
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This map is based on a cross between O. sativa cv. BG90-2 and the wild species, O. glumaepatula RS-16. A single plant of O. glumaepatula RS-16, selected from a highly inbred population of wild rice collected from the Amazon region, was used as a female parent in crosses with the high yielding elite inbred line O. sativa BG90-2. Four F1 plants were backcrossed to BG90-2 used as female parent. Based on their phenotypic similarity to BG90-2, 256 BC1F1 plants were selected and backcrossed to BG90-2, used again as the female progenitor. Ninety six BC2F1 progenies were selected at random and used for genotyping. The map totally has 157 markers, including 150 SSR and 7 STS markers. |
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| Map Set Name: |
JNIG W1944/Peik QTL 2002 |
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| Abbreviated Name: |
JNIG W1944/Peik QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
cah2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
30 June, 2002 |
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Description:
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This map is based on a cross between O. sativa cv. Pei-kuh and the wild species, O. rufipogon Griff.(W1944). A set of 125 F6 recombinant inbred lines (RILs) was used for genotyping. The map totally has 147 markers, including 121 RFLP markers, 17 isozymes, two protein markers, one RAPD marker and 6 qualitatively recognizable traits. The marker and map data for this population are kindly provided by Dr. H. W. Cai. |
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| Map Set Name: |
JHPRC Rei/Yamd QTL 2002 |
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| Abbreviated Name: |
JHPRC Rei/Yamd QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
yos2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
20 July, 2002 |
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Description:
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This map is constructed using double haploid lines derived from the cross between Reiho (a cooking variety) and Yamada-nishiki (a sake-brewing variety). The map consists of 145 markers, including RAPD, AFLP and SSR markers. |
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| Map Set Name: |
CNRRI XeiB/Mil46 RI QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNRRI XeiB/Mil46 RI QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
xij2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 July, 2002 |
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Description:
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A recombinant inbred line (RIL) population consisting of 210 lines was derived from the cross Xieqingzao B/Miyang 46, in which Xieqingzao B is the maintainer line of CMS-DA Xieqingzao A, and Miyang 46 is the restorer line. A linkage map consisting of 129 RFLP and SSLP markers was constructed. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Professor Kangle Zheng. |
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| Map Set Name: |
CNNJAU Tai65/Bhad QTL 2002 |
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| Abbreviated Name: |
CNNJAU Tai65/Bhad QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
wac2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 2002 |
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Description:
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A F2 population consisting of 96 lines was derived from the cross between a japonica cultivar Taichung 65 and an indica cultivar Bhadua. A linkage map consisting of 94 RFLP markers was constructed. |
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| Map Set Name: |
CNRRI Zh97B/Mil46 RI QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNRRI Zh97B/Mil46 RI QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
zhj2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 2002 |
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Description:
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A recombinant inbred line (RIL) population consisting of 209 F7lines was derived from the cross Zhenshan 97B/Milyang 46. A linkage map consisting of 158 DNA markers (122 RFLP and 36 SSLP) was constructed. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Professor Kangle Zheng. |
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