grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-TTU IR58821/IR52561 QTL 2002
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
AFLP
QTL
RFLP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Oryza sativa - TTU IR58821/IR52561 QTL 2002 [ View Map Set Info ]
Map Name: 7
Map Start: 0 cM
Map Stop: 139.9 cM
Features by Type:
29 AFLP
8 QTL
3 RFLP
40 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 40.       of 2 | Next
Oryza sativa - TTU IR58821/IR52561 QTL 2002 - 7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PC38M5 AFLP 0 Oryza sativa - TTU IRIR 2000 - 7 PC38M5 AFLP 0 (cM) Marker Identity View Maps
PC38M1 AFLP 2.7 Oryza sativa - TTU IRIR 2000 - 7 PC38M1 AFLP 2.7 (cM) Marker Identity View Maps
PC173M11 AFLP 5.6 Oryza sativa - TTU IRIR 2000 - 7 PC173M11 AFLP 5.6 (cM) Marker Identity View Maps
PC173M10 AFLP 5.6 Oryza sativa - TTU IRIR 2000 - 7 PC173M10 AFLP 5.6 (cM) Marker Identity View Maps
PC75M8 AFLP 13.7 Oryza sativa - TTU IRIR 2000 - 7 PC75M8 AFLP 13.7 (cM) Marker Identity View Maps
PC32M1 AFLP 17.8 Oryza sativa - TTU IRIR 2000 - 7 PC32M1 AFLP 17.8 (cM) Marker Identity View Maps
PC150M2 AFLP 32.1 Oryza sativa - TTU IRIR 2000 - 7 PC150M2 AFLP 32.1 (cM) Marker Identity View Maps
PC150M3 AFLP 32.1 Oryza sativa - TTU IRIR 2000 - 7 PC150M3 AFLP 32.1 (cM) Marker Identity View Maps
PC41M6 AFLP 32.4 Oryza sativa - TTU IRIR 2000 - 7 PC41M6 AFLP 32.4 (cM) Marker Identity View Maps
CDO385 RFLP 48.6 Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW085 QTL 33.1 - 113.8 (cM) qtl_marker View Maps
Maize - UMC 1998 - 7 bas1 RFLP 91.5 (cM) Marker Identity View Maps
Maize - Cornell Wilson 1999 - 2 CDO385 RFLP 196.3 (cM) Marker Identity View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQCU063 QTL 39.6 - 41.7 (cM) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFR005 QTL 10.8 - 45.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQF048-AWNLG QTL 2,081,175 - 2,634,193 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW084-PTHT QTL 12,785,560 - 12,786,962 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQCU151 QTL 19.3 - 45.8 (cM) qtl_marker View Maps
Oryza sativa - JNIG W1944/Peik QTL 2002 - 7 AQF079 QTL 0 - 25 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQF068-ANTLG QTL 2,081,175 - 17,820,931 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAP057-BPHRS QTL 17,525,817 - 25,775,868 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW127-SPKFRT QTL 17,819,896 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAL036-BIOMYLD QTL 17,819,896 - 28,411,821 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQAQ006 QTL 39.6 - 45.8 (cM) qtl_marker View Maps
Oryza sativa - TTU IRIR 2000 - 7 CDO385 RFLP 48.6 (cM) Marker Identity View Maps
Sorghum - Mace 2009 - 2 CDO385 RFLP 151.7 - 153.2 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQGC037-PENRTLG QTL 17,819,896 - 17,820,931 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFR002 QTL 10.8 - 45.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQCU151-PNLG QTL 12,785,560 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFV032 QTL 39.6 - 58 (cM) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 7 CDO385 RFLP 79.6 (cM) Marker Identity View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQCU221 QTL 39.6 - 41.7 (cM) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 CDO385 RFLP 33.1 (cM) Marker Identity View Maps
Oryza sativa - JNIG W1944/Peik QTL 2002 - 7 AQF048 QTL 0 - 25 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQCU063-PTHT QTL 18,683,511 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa - JNIG W1944/Peik QTL 2002 - 7 CQAH33 QTL 1.5 - 69 (cM) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW084 QTL 19.3 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 CDO385 RFLP 17,820,836 - 17,820,931 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFR005-SDLVIG QTL 12,783,492 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW195-DTHD QTL 18,683,511 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW085-PTHT QTL 17,525,817 - 25,775,868 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFR002-SDLVIG QTL 12,783,492 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAQ006-BLRS QTL 17,525,817 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQCU241-SPKNB QTL 17,819,896 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQGC002-RTNB QTL 17,819,896 - 17,820,931 (bp) qtl_marker View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 7 CDO385 RFLP 40.8 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAL056-DRTDWT QTL 17,819,896 - 28,411,821 (bp) qtl_marker View Maps
Sorghum - Paterson 2003 - B CDO0385 RFLP 39.2 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQCU047-SPKFRT QTL 12,785,560 - 12,786,962 (bp) qtl_marker View Maps
Sorghum - Klein 2004 - LG-02 CDO385 RFLP 145.2 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 CDO385 RFLP 17,819,896 - 17,820,090 (bp) Marker Identity View Maps
Maize - Maize Bins QTL 2005 - 2 Bin 2.08 Maize Bin 149.2 - 171.9 (cM) Maize bin marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 CQAH33-SDDOR QTL 2,081,175 - 17,820,931 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW195 QTL 39.6 - 41.7 (cM) qtl_marker View Maps
Oat - Cornell Diploid 1995 - B CDO385 RFLP 59.9 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW072-DTHD QTL 18,683,511 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFR009 QTL 39.6 - 41.7 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAQ016-BLRS QTL 17,525,817 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa - JNIG W1944/Peik QTL 2002 - 7 AQF068 QTL 25 - 69 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFW104-PNLG QTL 17,525,817 - 25,775,868 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW072 QTL 39.6 - 41.7 (cM) qtl_marker View Maps
Maize - IBM2 2008 Neighbors - 2 cdo385 Probed site 548.3 (cM) maizegdb_to_gramene View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQAQ016 QTL 39.6 - 45.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFV032-SDLVIG QTL 17,525,817 - 19,257,039 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQAL020-DRTDWT QTL 17,819,896 - 17,820,931 (bp) qtl_marker View Maps
Oryza sativa - JNIG W1944/Peik QTL 2002 - 7 CDO385 RFLP 69 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQF079-GRYLD QTL 2,081,175 - 2,634,193 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW127 QTL 33.1 - 39.6 (cM) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQFW104 QTL 33.1 - 113.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQCU221-LFWD QTL 18,683,511 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQFR009-SDLVIG QTL 18,683,511 - 18,686,761 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQCU047 QTL 19.3 (cM) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQAP057 QTL 33.1 - 113.8 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 7 AQGC033-PENRTTH QTL 28,411,532 - 29,467,498 (bp) qtl_marker View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 7 AQCU241 QTL 33.1 - 39.6 (cM) qtl_marker View Maps
Maize - Bins - 2 Bin 2.08 Maize Bin 149.2 - 171.9 (bins) Maize bin marker View Maps
PC34M1 AFLP 56.7 Oryza sativa - TTU IRIR 2000 - 7 PC34M1 AFLP 56.7 (cM) Marker Identity View Maps
PC15M1 AFLP 59.2 Oryza sativa - TTU IRIR 2000 - 7 PC15M1 AFLP 59.2 (cM) Marker Identity View Maps
PC18M3 AFLP 59.9 Oryza sativa - TTU IRIR 2000 - 7 PC18M3 AFLP 59.9 (cM) Marker Identity View Maps
PC35M11 AFLP 60.3 Oryza sativa - TTU IRIR 2000 - 7 PC35M11 AFLP 60.3 (cM) Marker Identity View Maps
PC18M2 AFLP 62 Oryza sativa - TTU IRIR 2000 - 7 PC18M2 AFLP 62 (cM) Marker Identity View Maps
PC26M9 AFLP 62 Oryza sativa - TTU IRIR 2000 - 7 PC26M9 AFLP 62 (cM) Marker Identity View Maps
PC27M10 AFLP 65.2 Oryza sativa - TTU IRIR 2000 - 7 PC27M10 AFLP 65.2 (cM) Marker Identity View Maps
PC41M9 AFLP 66.7 Oryza sativa - TTU IRIR 2000 - 7 PC41M9 AFLP 66.7 (cM) Marker Identity View Maps
PC41M8 AFLP 66.7 Oryza sativa - TTU IRIR 2000 - 7 PC41M8 AFLP 66.7 (cM) Marker Identity View Maps
PC12M2 AFLP 69.5 Oryza sativa - TTU IRIR 2000 - 7 PC12M2 AFLP 69.5 (cM) Marker Identity View Maps
PC12M3 AFLP 69.5 Oryza sativa - TTU IRIR 2000 - 7 PC12M3 AFLP 69.5 (cM) Marker Identity View Maps
PC27M11 AFLP 71.2 Oryza sativa - TTU IRIR 2000 - 7 PC27M11 AFLP 71.2 (cM) Marker Identity View Maps
PC15M12 AFLP 73 Oryza sativa - TTU IRIR 2000 - 7 PC15M12 AFLP 73 (cM) Marker Identity View Maps
PC73M2 AFLP 76 Oryza sativa - TTU IRIR 2000 - 7 PC73M2 AFLP 76 (cM) Marker Identity View Maps
PC20M7 AFLP 78.9 Oryza sativa - TTU IRIR 2000 - 7 PC20M7 AFLP 78.9 (cM) Marker Identity View Maps