grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oryza sativa-JNARC Noe29/Chu32 F3 QTL 2002
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6b
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
RFLP
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: QTL [ View Map Type Info ]
Map Set Name: Oryza sativa - JNARC Noe29/Chu32 F3 QTL 2002 [ View Map Set Info ]
Map Name: 6b
Map Start: 0 cM
Map Stop: 13.8 cM
Features by Type:
5 RFLP
5 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
Oryza sativa - JNARC Noe29/Chu32 F3 QTL 2002 - 6b
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
C69 RFLP 0 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 C69 RFLP 29,503,726 - 29,504,398 (bp) Marker Identity View Maps
Oryza sativa - JRGP RFLP 2000 - 6 C69 RFLP 117 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQE47-CHLCN QTL 27,612,443 - 31,173,447 (bp) qtl_marker View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 C69 RFLP 30,381,726 - 30,381,825 (bp) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQE47 QTL 107.3 - 124.4 (cM) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 C69 RFLP 117 (cM) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 C69 RFLP 30,382,238 - 30,382,398 (bp) Marker Identity View Maps
R2091 RFLP 3.7 Oryza sativa - JRGP RFLP 2000 - 6 R2091 RFLP 115.6 (cM) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 9 R2091 RFLP 10,202,650 - 10,202,890 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQE47-CHLCN QTL 27,612,443 - 31,173,447 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQE47 QTL 107.3 - 124.4 (cM) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 R2091 RFLP 115.6 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 9 R2091 RFLP 9,636,570 - 9,637,013 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 9 R2091 RFLP 9,635,938 - 9,636,178 (bp) Marker Identity View Maps
R1888 RFLP 8.3 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 R1888 RFLP 12,363,641 - 12,365,220 (bp) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 R1888 RFLP 12,506,532 - 12,506,823 (bp) Marker Identity View Maps
Oryza sativa - JRGP RFLP 2000 - 6 R1888 RFLP 121.7 (cM) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 R1888 RFLP 121.7 (cM) Marker Identity View Maps
Oryza sativa - NIAS Sas/Hab BCIL QTL 2003 - 6 R1888 RFLP 85.8 (cM) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 R1888 RFLP 12,508,854 - 12,508,905 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQE47-CHLCN QTL 27,612,443 - 31,173,447 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQE47 QTL 107.3 - 124.4 (cM) qtl_marker View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 R1888 RFLP 12,507,326 - 12,507,331 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 R1888 RFLP 12,362,847 - 12,363,138 (bp) Marker Identity View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 R1888 RFLP 12,507,804 - 12,508,142 (bp) Marker Identity View Maps
R1167 RFLP 10.1 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQX23-INLG QTL 24,916,395 - 30,945,789 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQX14-PNLG QTL 24,916,395 - 30,945,789 (bp) qtl_marker View Maps
Oryza sativa - NIAR PI312777/Rex F2 QTL 2001 - 6 CQAD4 QTL 116.7 - 135.6 (cM) qtl_marker View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 R1167 RFLP 31,823,159 - 31,823,789 (bp) Marker Identity View Maps
Oryza sativa - NIAR Nip/Owar F4 QTL 2001 - 6 R1167 RFLP 129.5 (cM) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 R1167 RFLP 124.4 (cM) Marker Identity View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 R1167 RFLP 91.6 (cM) Marker Identity View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 CQX14 QTL 64.4 - 91.6 (cM) qtl_marker View Maps
Oryza sativa - JRGP RFLP 2000 - 6 R1167 RFLP 124.4 (cM) Marker Identity View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 CQX23 QTL 64.4 - 91.6 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQAD4-ALLELPATHEF QTL 28,695,316 - 30,945,789 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQX19-INLG QTL 21,605,889 - 27,660,157 (bp) qtl_marker View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 CQX18 QTL 78.9 - 91.6 (cM) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQE47-CHLCN QTL 27,612,443 - 31,173,447 (bp) qtl_marker View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQX9-CULMLG QTL 24,916,395 - 30,945,789 (bp) qtl_marker View Maps
Oryza sativa - CNSIPPE Non/Kos QTL 2004 - 6 R1167 RFLP 182.6 (cM) Marker Identity View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQE47 QTL 107.3 - 124.4 (cM) qtl_marker View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 6 R1167 RFLP 31,822,729 - 31,822,807 (bp) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 R1167 RFLP 30,944,729 - 30,945,789 (bp) Marker Identity View Maps
Oryza sativa - NIAR PI312777/Rex F2 QTL 2001 - 6 R1167 RFLP 135.6 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQX18-INLG QTL 27,658,249 - 30,945,789 (bp) qtl_marker View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 CQX9 QTL 64.4 - 91.6 (cM) qtl_marker View Maps
Oryza sativa - NIAS Kosh/Kas BIL QTL 2003 - 6 CQX19 QTL 54.7 - 78.9 (cM) qtl_marker View Maps
R1608 RFLP 13.8 Oryza sativa - JRGP RFLP 2000 - 6 R1608 RFLP 122.8 (cM) Marker Identity View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 6 CQE47-CHLCN QTL 27,612,443 - 31,173,447 (bp) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 CQE47 QTL 107.3 - 124.4 (cM) qtl_marker View Maps
Oryza sativa - JRGP Nip/Kas F2 QTL 2000 - 6 R1608 RFLP 122.8 (cM) Marker Identity View Maps