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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa-Class I SSR (IRGSP) 2005
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps 6
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (IRGSP) 2005 [ View Map Set Info ]
Map Name: 6
Map Start: 0 bp
Map Stop: 30,697,097 bp
Features by Type:
964 SSR
964 Total

Map Features

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Items 1 to 25 of 964.       of 39 | Next
Oryza sativa - Class I SSR (IRGSP) 2005 - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM20464 SSR 25,516,318 - 25,516,688 No other positions
RM20466 SSR 25,546,901 - 25,547,174 No other positions
RM20468 SSR 25,593,560 - 25,593,655 No other positions
RM20469 SSR 25,596,089 - 25,596,265 No other positions
RM20473 SSR 25,719,168 - 25,719,276 No other positions
RM20474 SSR 25,761,074 - 25,761,461 No other positions
RM20476 SSR 25,765,957 - 25,766,115 No other positions
RM20477 SSR 25,765,957 - 25,766,115 No other positions
RM20479 SSR 25,813,861 - 25,813,946 No other positions
RM20482 SSR 25,949,265 - 25,949,594 No other positions
RM20484 SSR 25,971,696 - 25,972,072 No other positions
RM20487 SSR 26,079,275 - 26,079,490 No other positions
RM20488 SSR 26,095,748 - 26,095,929 No other positions
RM20489 SSR 26,099,246 - 26,099,511 No other positions
RM20490 SSR 26,108,378 - 26,108,560 No other positions
RM20491 SSR 26,114,427 - 26,114,508 No other positions
RM20492 SSR 26,127,448 - 26,127,528 No other positions
RM20493 SSR 26,137,987 - 26,138,128 No other positions
RM20494 SSR 26,142,592 - 26,142,909 No other positions
RM20495 SSR 26,165,968 - 26,166,186 No other positions
RM20497 SSR 26,187,843 - 26,188,105 No other positions
RM20498 SSR 26,188,085 - 26,188,584 No other positions
RM20499 SSR 26,201,770 - 26,202,063 No other positions
RM20500 SSR 26,214,009 - 26,214,466 No other positions
RM20501 SSR 26,228,385 - 26,228,584 No other positions