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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Oryza sativa-Class I SSR (TIGR) 2005
(Reference Set)
Min.
Correspondences
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Maps 3
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Sequence [ View Map Type Info ]
Map Set Name: Oryza sativa - Class I SSR (TIGR) 2005 [ View Map Set Info ]
Map Name: 3
Map Start: 0 bp
Map Stop: 36,322,903 bp
Features by Type:
1,479 SSR
1,479 Total

Map Features

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Items 1 to 25 of 1,479.       of 60 | Next
Oryza sativa - Class I SSR (TIGR) 2005 - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM14234 SSR 549 - 722 No other positions
RM14233 SSR 549 - 722 No other positions
RM14240 SSR 99,666 - 99,849 No other positions
RM14241 SSR 104,191 - 104,285 No other positions
RM14242 SSR 104,661 - 105,143 No other positions
RM14243 SSR 114,051 - 114,348 No other positions
RM14244 SSR 117,418 - 117,812 No other positions
RM14245 SSR 120,669 - 120,765 No other positions
RM14247 SSR 157,390 - 157,685 No other positions
RM14248 SSR 170,834 - 171,194 No other positions
RM14252 SSR 196,018 - 196,406 No other positions
RM14251 SSR 196,018 - 196,406 No other positions
RM14254 SSR 230,215 - 230,507 No other positions
RM14255 SSR 230,215 - 230,507 No other positions
RM14259 SSR 244,678 - 244,923 No other positions
RM14260 SSR 247,250 - 247,563 No other positions
RM14262 SSR 318,116 - 318,285 No other positions
RM14270 SSR 413,755 - 414,142 No other positions
RM14271 SSR 418,572 - 418,775 No other positions
RM14272 SSR 448,505 - 448,628 No other positions
RM14273 SSR 457,694 - 457,774 No other positions
RM14274 SSR 473,282 - 473,486 No other positions
RM14275 SSR 473,771 - 473,966 No other positions
RM14276 SSR 488,526 - 488,677 No other positions
RM14277 SSR 502,513 - 502,794 No other positions