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| Map Set Name: |
Dvorak 2009 |
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| Abbreviated Name: |
Dvorak 2009 |
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| Accession ID: |
dvo2010a |
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| Species: |
Aegilops tauschii (Aegilops tauschii) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
15 September, 2009 |
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| Map Set Name: |
Barley consensus 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
Barley consensus 2003 |
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| Accession ID: |
kaa2003a |
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| Species: |
Hordeum vulgare (Barley) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
31 December, 2003 |
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Description:
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Original remarks from GrainGenes:
This consensus map combined five Australian barley linkage maps, Galleon x Haruna Nijo, Chebec X Harrington, Clipper x Sahara, Alexis x Sloop and Amaji Nijo x W12585. Mapping was done using JOINMAP 2.0 and consensus map order aligned well with the linkage maps, except for a small inversion near the centromere of 5H. 136 SSRs were among the 700 markers on these maps for a total distance of 933 cM. |
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| Map Set Name: |
Barley, Consensus 2006, Stein |
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| Abbreviated Name: |
Stein Consensus 2006 |
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| Accession ID: |
stn2007a |
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| Species: |
Hordeum vulgare (Barley) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
01 March, 2007 |
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Description:
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A consensus transcript map of barley containing 1032 EST-based markers. 45 cMWG markers (Graner et al. 1991), 185 GBM markers (Thiel et al. 2003, Varshney et al. 2006) and 200 additional anchor markers (Costa et al. 2001, Graner et al. 1991, Kleinhofs et al. 1993) were integrated with new EST-based RFLP, SNP markers. Maps were constructed using Joinmap version 3.0 and Map Manager QTX; a LOD threshold of 3.0 was required for linkage mapping. |
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| Map Set Name: |
Close 2943-SNP 2009 |
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| Abbreviated Name: |
Close 2009 |
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| Accession ID: |
clo2009a |
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| Species: |
Hordeum vulgare (Barley) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
04 December, 2009 |
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| Map Set Name: |
NABGMP SxM 1993 |
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| Abbreviated Name: |
NABGMP SxM 1993 |
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| Accession ID: |
nabgmp-1993 |
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| Species: |
Hordeum vulgare (Barley) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
31 December, 1993 |
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Description:
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This is the North American Barley Genome Mapping Project's genetic map of barley presented by GrainGenes. It was constructed from 150 doubled haploid F1 progeny from a reciprocal cross between barley cultvars Steptoe x Morex using 437 markers. |
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| Map Set Name: |
Barley consensus - 1995 |
[ Show Only This Set ] |
| Abbreviated Name: |
Barley consensus - 1995 |
[ Download Map Set Data ] |
| Accession ID: |
lap1995a |
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| Species: |
Hordeum vulgare (Barley) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 1995 |
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| Map Set Name: |
Barley consensus 2 - 1996 |
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| Abbreviated Name: |
Barley consensus 2 - 1996 |
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| Accession ID: |
qix1996a |
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| Species: |
Hordeum vulgare (Barley) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 1996 |
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| Map Set Name: |
Barley genes 2 - 1997 |
[ Show Only This Set ] |
| Abbreviated Name: |
Barley genes 2 - 1997 |
[ Download Map Set Data ] |
| Accession ID: |
frj1997a |
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| Species: |
Hordeum vulgare (Barley) |
[ View Species Info ] |
| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
12 December, 1997 |
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Description:
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Original remarks from GrainGenes:
Positions are estimated based on linkage information present in the Barley Genetic Stocks descriptions for barley genes. These maps are designed to provide estimates of gene positions so that potential users have some information with which to develop experiments. Thus changes will occur frequently as more information accumulates. |
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| Map Set Name: |
Devos 2011 |
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| Abbreviated Name: |
Devos 2011 |
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| Accession ID: |
dev2011 |
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| Species: |
Setaria italica (Foxtail millet) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
23 April, 2012 |
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| Map Set Name: |
IBM 2002 |
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| Abbreviated Name: |
IBM 2002 |
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| Accession ID: |
ibm-2002 |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
01 January, 2002 |
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| Map Set Name: |
IBM2 2008 Neighbors |
[ Show Only This Set ] |
| Abbreviated Name: |
IBM2 2008 Neighbors |
[ Download Map Set Data ] |
| Accession ID: |
ibm2-2008 |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
N/A |
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Description:
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Neighbors 2008 maps were computed using the same algorithm as for previous versions, with manual review of values for chromosome ends. Unlike the 2005 version, this consensus genetic map includes only loci mapped in recombination experiments, and it excludes loci that were only mapped to the FPC maps. The frame for the IBM2 Neighbors is the IBM2 map used to anchor the B73 FPC contigs, in turn used to select the minimum tiling path for the B73 genome sequence project. This 2008 Neighbors includes some 15,000 loci, most with sequence-based probes, and some 10,000 had statistically defendable orders on source maps. These latter are separately represented in the Neighbors Frame maps. Contributions to Neighbors come from many sources. New locus additions come from the Genetic 2008 map provided by Ed Coe (1033 new loci); the ISU IBM Map7 provided by Pat Schnable (4647 new loci); NAM diversity maps from Mike McMullen (1045 new loci); and SSR B73 x Mo17 Davis (117 new loci). We used IBM2 FPC0507, a hybrid genetic-physical map, to position some 508 loci whose orders are not statistically well-defended on source maps, but are ordered on the July 2005 agarose FPC build (from Cari Soderlund, www.genome.arizona.edu/fpc/maize). In choosing the frame for the computation both the resolution power of a mapping panel, and the actual numbers of resolved coordinates were considered (for example, 3 loci with a coordinate of 21.1 on a particular chromosome map are counted only once). |
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| Map Set Name: |
Nested Association Mapping (NAM) 2008 |
[ Show Only This Set ] |
| Abbreviated Name: |
NAM 2008 |
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| Accession ID: |
nam2008 |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
03 July, 2008 |
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Description:
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Maize NAM map as downloaded from the Panzea website.
From the Panzea FAQ:
Our collection of 5000 RILs in 25 populations (plus the pre-existing IBM RIL population derived from a cross of B73 and Mo17) is collectively referred to as our "maize Nested Association Mapping (NAM) population". NAM is a new approach to the mapping of genes underlying complex traits, in which the statistical power of QTL mapping is combined with the high (potentially gene-level) chromosomal resolution of association mapping. The RILs are "nested" in the sense that they all share a common parent, B73, but each population has a different alternate parent. The NAM strategy consists of genotyping a feasible number of (e.g., about 1000-2000) common parent specific SNPs in the entire mapping population, in combination with much higher resolution genotyping of the 26 parents (e.g., by sequencing the entire genome of all 26 parents). The common parent specific SNPs are either present only in B73 or are present in B73 and rare in the other parents. These are used to classify each chromosomal segment that they define in each RIL according to whether it derives from B73 or from the corresponding alternate parent. In this manner, the high resolution genotypic sequence data can be projected from the parents onto the RIL offspring, without the need to sequence all the offspring. An association analysis can then be performed across the entire population. This takes advantage of historical recombination in the ancestors of the 26 parents in order to map the genes responsible for a given trait, potentially down to gene-level resolution. The NAM concept is further explained and demonstrated via computer simulation in Yu et al. (2008). |
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| Map Set Name: |
BNL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
BNL 1996 |
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| Accession ID: |
bnl-1996 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
20 November, 1996 |
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Description:
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This is the maize BNL 96 map originally presented by MaizeDB. The data has now been incorporated into MaizeGDB. |
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| Map Set Name: |
UMC 1998 |
[ Show Only This Set ] |
| Abbreviated Name: |
UMC 1998 |
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| Accession ID: |
umc-1998 |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
08 January, 1998 |
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Description:
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This is the maize UMC 98 map originally presented by MaizeDB. The data has now been incorporated into MaizeGDB
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| Map Set Name: |
Cornell Wilson 1999 |
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| Abbreviated Name: |
Cornell Wilson 1999 |
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| Accession ID: |
cu-wilson-1999 |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
31 December, 1999 |
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Description:
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Marker loci from several maize RFLP genetic maps were combined to facilitate comparison of the maize and rice genomes. The BNL 96 T232/CM RI (Burr et al., 1993) genetic map was selected to serve as framework. Newly mapped ISU markers, previously mapped markers from Ahn and Tanksley (1993), and markers retrieved from MaizeDB were positioned relative to the framework at LOD 2.0. Conflicting marker orders due to low LODs arising from tight linkage were sorted to the inclusion of comparatively mapped loci on the framework. ISU loci mapped in CO159/Tx303 RI (Matz et al. 1994) and markers retrieved from MaizeDB mapped onto the same population as above and/or Tx303/CO159 IF2 (Davis et al. 1994) were cross-referenced by common markers and placed to inferred positions. |
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| Map Set Name: |
SSR IBM 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
SSR IBM 2001 |
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| Accession ID: |
ssr-ibm-2001 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
12 March, 2001 |
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Description:
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This is the SSR IBM map produced by the Maize Mapping Project (MMP) as originally presented in MaizeDB. The data has now been incorporated into MaizeGDB. |
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| Map Set Name: |
Oat, KxO, 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
Oat, KxO, 2003 |
[ Download Map Set Data ] |
| Accession ID: |
wic2003a |
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| Species: |
Avena sativa (Oat) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
08 December, 2003 |
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| Map Set Name: |
Cornell Diploid 1995 |
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| Abbreviated Name: |
Cornell Diploid 1995 |
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| Accession ID: |
cu-diploidoat-1995 |
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| Species: |
Avena sativa (Oat) |
[ View Species Info ] |
| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
31 December, 1995 |
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Description:
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The oat population used in this study consisted of 44 F2-derived F3 familes from a cross betwen two A-genome diploid oat species Avena altantica M66/3 x A. hirtula Cc7050-CAV4490. Markers were placed at a LOD threshold of 2.0 using MAPMAKER 3.0 with the Kosambi mapping function.
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| Map Set Name: |
JRGP RFLP 2000 |
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| Abbreviated Name: |
JRGP RFLP 2000 |
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| Accession ID: |
jrgp-rflp-2000 |
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| Species: |
Oryza sativa (Oryza sativa) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
23 October, 2002 |
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Description:
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This is an updated version of the map reported by Kurata et al. (1994) and Harushima et al. (1998). It uses an F2 population of 186 plants from a cross between the cultivars Nipponbare (japonica) and Kasalath (indica). A total of 3267 markers were located covering 1530.4 cM. Marker names ending with the letter 'S' indicate that the 3' UTR of a cDNA fragment was used as a probe rather than the whole insert. The centromere position of chromosome 10 has been updated to reflect the new estimate given by Cheng et al. (2001). |
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| Map Set Name: |
IRMI 2003 |
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| Abbreviated Name: |
IRMI 2003 |
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| Accession ID: |
irmi-2003 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
09 December, 2002 |
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Description:
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Electronic PCR (e-PCR) was used to align 1825 newly-developed as well as 217 previously-reported SSR markers for rice to 3284 sequenced rice BACs and PACs. The positions of the SSR markers are reported relative to RFLP and STS markers on the JRGP RFLP 2000 map. |
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| Map Set Name: |
IGCN 1998 |
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| Abbreviated Name: |
IGCN 1998 |
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| Accession ID: |
igcn-1998 |
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| Species: |
Oryza sativa (Oryza sativa) |
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| Map Type: |
Genetic |
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| Map Units: |
cM |
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| Published On: |
30 March, 2005 |
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Description:
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This map was developed by the Institute of Genetics, Chinese Academy of Sciences. It is derived from a doubled-haploid inter-subspecific cross between indica variety ZhaiYeQing 8 and japonica variety JingXi 17. The map consists of 276 RFLP, 34 RAPD, 89 SSR, 10 AFLP, 10 TAS, and 9 isozyme markers. |
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| Map Set Name: |
CIAT SSR 2006 |
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| Abbreviated Name: |
CIAT SSR 2006 |
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| Accession ID: |
lom2006 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
16 February, 2006 |
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Description:
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Map shows triplets of SSRs spaced evenly (~15 cM) throughout the rice genome developed by Mathias Lorieux and his group at CIAT.
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| Map Set Name: |
KRGRP 1998 |
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| Abbreviated Name: |
KRGRP 1998 |
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| Accession ID: |
krgrp-1998 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 1998 |
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Description:
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This is the map of the Korean Rice Genome Research Program. It was derived from a population of 164 RI lines developed via single-seed descent from a cross between Milyang 23 (tongil type) and Gihobyeo (japonica type). It integrates 231 AFLP, 212 RFLP, 86 SSLP (SSR), five isozymes, and two morphological markers. |
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| Map Set Name: |
Hokkaido Morphological 2000 |
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| Abbreviated Name: |
Morph 2000 |
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| Accession ID: |
morph-2000 |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 January, 2000 |
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Description:
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This is the most up-to-date version of the classical linkage map of rice developed by Kinoshita (1998) from morphological mutant stocks. Since the last published version, Ssi1 and d61 have been added to chromosome 1, dl on chromosome 3 was changed to dl1 and eui on chromosome 5 was changed to eui1. |
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| Map Set Name: |
TTU CTIR 2000 |
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| Abbreviated Name: |
TTU CTIR 2000 |
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| Accession ID: |
ctir |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
11 August, 2000 |
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Description:
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The mapping population was a set of 154 doubled-haploid lines derived from a cross between IR62266-42-6-2 x CT9993-5-10-1-M. CT9993 was originally developed at CIAT from a complex cross involving primarily African upland varieties (some japonica background in pedigree), whereas IR62266, a lowland indica, was developed at IRRI. A total of 315 markers (145 RFLP, 158 AFLP, and 12 SSR) were mapped at a LOD threshold of 3.0. The total map length was 1788 cM; the average distance between two markers 6 cM. |
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