grain_iconCMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial  
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-IBM2 2008 Neighbors
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 8
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Centromere
Gene
Gene candidate
Gene family
Point
Probed site
Pseudogene
QTL
Restriction fragment
RFLP
Telomere
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
IAGP
Marker Identity
ISS
Wheat EST Breakpoint Interval
Amplified segment
Maize bin marker
centromeric_marker
Clone end
Collinear block
Constituent clone
contained_in_sequence
EST cluster
hybridisation
maizegdb_to_gramene
Mapped contig to clone
mate_pair
qtl_marker
related_probe
related_sequence
Shared sequence
Shared synonym
Source sequence
Subclone
Synteny
Synteny block
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - IBM2 2008 Neighbors [ View Map Set Info ]
Map Name: 8
Map Start: -43.2 cM
Map Stop: 895 cM
Features by Type:
1 Centromere
321 Gene
2 Gene candidate
2 Gene family
6 Point
1,010 Probed site
1 Pseudogene
1 QTL
2 Restriction fragment
22 RFLP
2 Telomere
1,370 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 1,370.       of 55 | Next
Maize - IBM2 2008 Neighbors - 8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pbs13d Probed site -43.2 No other positions
umc2511 Probed site -39.3 No other positions
IDP7800 Probed site -30.07 No other positions
TIDP6644 Probed site -30.07 No other positions
TIDP5557 Probed site -26.77 No other positions
IDP7866 Probed site -26.77 No other positions
IDP8319 Probed site -26.77 No other positions
IDP8985 Probed site -26.77 No other positions
IDP8989 Probed site -26.77 No other positions
TIDP5128 Probed site -18.07 No other positions
IDP7562 Probed site -18.07 No other positions
IDP4125 Probed site -8.77 No other positions
TIDP5757 Probed site -8.77 No other positions
IDP8443 Probed site -8.77 No other positions
gpm218c Probed site -2 No other positions
npi220a Probed site 0 Maize - FPC maize May 2006 - ctg392 npi220a.A RFLP 111 (bands) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 8 npi220a RFLP 0 (cM) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 10 npi220a.A RFLP 543,901 (bp) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg764 G10F-01 RFLP 67 - 160 (bands) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg506 G10F-01 RFLP 552 - 579 (bands) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg37 npi220a.A RFLP 425 (bands) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 8 npi220a RFLP 2,077,601 (bp) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 3 npi220b RFLP 61.3 (cM) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 2 npi220a.A RFLP 131,976,601 (bp) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg315.8 G10F-01 RFLP 411 - 412 (bands) maizegdb_to_gramene View Maps
Maize - Bologna Os420/Iab78 QTL 1998 - 3 npi220b RFLP 49.3 (cM) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg107 G10F-01 RFLP 3,678 - 3,691 (bands) maizegdb_to_gramene View Maps
Maize - SSR IBM 2001 - 8 npi220a RFLP 0 (cM) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg31.1 G10F-01 RFLP 411 - 439 (bands) maizegdb_to_gramene View Maps
Maize - IBM 2002 - 8 npi220a RFLP 0 (cM) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg271 npi220a.A RFLP 139 (bands) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg315 npi220a RFLP 411 - 412 (bands) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg264.6 G10F-01 RFLP 124 - 155 (bands) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg764.0 G10F-01 RFLP 67 - 160 (bands) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg84 npi220a.A RFLP 565 (bands) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg264 G10F-01 RFLP 124 - 155 (bands) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg31 G10F-01 RFLP 411 - 439 (bands) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 6 npi220a.A RFLP 72,701,301 (bp) maizegdb_to_gramene View Maps
Maize - BNL 1996 - 8 npi220a RFLP 9.4 (cM) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg384 G10F-01 RFLP 97 - 125 (bands) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 2 npi220d RFLP 75.2 (cM) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg506.0 G10F-01 RFLP 552 - 579 (bands) maizegdb_to_gramene View Maps
Maize - BNL 1996 - 3 npi220b RFLP 66 (cM) maizegdb_to_gramene View Maps
Maize - Cornell Wilson 1999 - 8 npi220a RFLP 11 (cM) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 1 npi220a.A RFLP 145,677,001 (bp) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg117 npi220a.A RFLP 3,690 (bands) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg326 npi220a RFLP 424 (bands) maizegdb_to_gramene View Maps
Maize - FPC maize May 2006 - ctg725 npi220a.A RFLP 113 (bands) maizegdb_to_gramene View Maps
Maize - UWM B73/Mo17 QTL 1996 - 8 npi220 RFLP 0 (cM) maizegdb_to_gramene View Maps
Maize - FPC Chr maize May 2006 - 3 npi220a.A RFLP 44,041,201 (bp) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg107.3 G10F-01 RFLP 3,678 - 3,691 (bands) maizegdb_to_gramene View Maps
Maize - Maize Bins QTL 2005 - 8 npi220a RFLP 0 (cM) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg384.10 G10F-01 RFLP 97 - 125 (bands) maizegdb_to_gramene View Maps
Maize - Bins - 8 npi220a RFLP 0 (bins) maizegdb_to_gramene View Maps
npi222b Probed site 0 Maize - BNL 1996 - 9 npi222a RFLP 59.9 (cM) maizegdb_to_gramene View Maps
Maize - BNL 1996 - 8 npi222b RFLP 9.4 (cM) maizegdb_to_gramene View Maps
telomere8S Telomere 0 No other positions
IDP8573 Probed site 0.83 No other positions
csu597b(dah) Probed site 1.36 Maize - UMC 1998 - 7 csu597c(dah) RFLP 111 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 8 csu597b(dah) RFLP 0.9 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 4 csu597d(dah) RFLP 112.1 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 8 csu597e(dah) RFLP 119.1 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 4 csu597a(dah) RFLP 126.3 (cM) maizegdb_to_gramene View Maps
gpm865 Probed site 4.47 No other positions
csu319 Probed site 5.9 Maize - FPC maize May 2006 - ctg326 csu319 RFLP 434 (bands) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 8 csu319 RFLP 3.9 (cM) maizegdb_to_gramene View Maps
Maize - IBM 2002 - 8 csu319 RFLP 5.9 (cM) maizegdb_to_gramene View Maps
Maize - AGI FPC Oct 2004 - ctg315 csu319 RFLP 422 - 432 (bands) maizegdb_to_gramene View Maps
Maize - Curated AGI FPC Oct 2004 - ctg315.8 csu319 RFLP 422 - 432 (bands) maizegdb_to_gramene View Maps
umc4b Probed site 6.1 Maize - INRA Io/F2 Composite QTL 1996 - 2 umc4a RFLP 123 (cM) maizegdb_to_gramene View Maps
Maize - Iowa Mo17/H99 RI QTL 1996 - 2 UMC4 RFLP 145.5 (cM) maizegdb_to_gramene View Maps
Maize - BNL 1996 - 2 umc4a RFLP 143.1 (cM) maizegdb_to_gramene View Maps
Sorghum - Klein 2004 - LG-02 UMC4 RFLP 151.2 (cM) maizegdb_to_gramene View Maps
Maize - BNL 1996 - 8 umc4b RFLP 169.8 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 2 umc4a RFLP 149.2 (cM) maizegdb_to_gramene View Maps
Sorghum - Paterson 2003 - B UMC004 RFLP 36.9 (cM) maizegdb_to_gramene View Maps
Sorghum - Mace 2009 - 2 UMC4 RFLP 162.4 (cM) maizegdb_to_gramene View Maps
bnlg1252 Probed site 6.46 No other positions
rz382b Probed site 6.7 Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 RZ382 RFLP 9,701,793 - 9,702,029 (bp) maizegdb_to_gramene View Maps
Oryza sativa - Cornell V20A/glab QTL 2004 - 1 RZ382 RFLP 114.9 (cM) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 3 rz382a RFLP 58 (cM) maizegdb_to_gramene View Maps
Oryza sativa japonica - Gramene Annot Seq 2009 - Chr. 1 RZ382 RFLP 9,706,088 - 9,707,307 (bp) maizegdb_to_gramene View Maps
Maize - Cornell Wilson 1999 - 8 RZ382 RFLP 9.8 (cM) maizegdb_to_gramene View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 2001 - 1 RZ382 RFLP 39.85 (cM) maizegdb_to_gramene View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 RZ382 RFLP 9,706,068 - 9,706,080 (bp) maizegdb_to_gramene View Maps
Maize - UMC 1998 - 8 rz382b RFLP 3.9 (cM) maizegdb_to_gramene View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 RZ382 RFLP 9,701,773 - 9,702,009 (bp) maizegdb_to_gramene View Maps
Oryza sativa x Oryza longistaminata - Cornell RFLP 1994 - 1 RZ382 RFLP 59.9 (cM) maizegdb_to_gramene View Maps
Oryza sativa - IRRI Lem/Teq RI QTL 2001 - 1 RZ382 RFLP 91.6 (cM) maizegdb_to_gramene View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 RZ382 RFLP 9,707,172 - 9,707,287 (bp) maizegdb_to_gramene View Maps
Oryza sativa - Gramene IRGSP Assm 2005 - Chr. 1 RZ382 RFLP 9,706,407 - 9,706,481 (bp) maizegdb_to_gramene View Maps
Oryza sativa - Cornell IR64/IRG105 QTL 2003 - 1 RZ382 RFLP 79.1 (cM) maizegdb_to_gramene View Maps
Maize - IBM 2002 - 8 rz382b RFLP 6.7 (cM) maizegdb_to_gramene View Maps
Maize - IBM 2002 - 3 rz382a RFLP 214.9 (cM) maizegdb_to_gramene View Maps
Maize - SSR IBM 2001 - 3 rz382a RFLP 179 (cM) maizegdb_to_gramene View Maps
Oryza sativa - Cornell Jef/Oruf BC QTL 2003 - 1 RZ382 RFLP 54.5 (cM) maizegdb_to_gramene View Maps