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| Map Set Name: |
AGI FPC Oct 2004 |
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| Abbreviated Name: |
AGI FPC Oct 2004 |
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| Accession ID: |
agimf1104a |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Physical |
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| Map Units: |
bands |
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| Published On: |
12 November, 2004 |
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| Map Set Name: |
Curated AGI FPC Oct 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
Curated AGI FPC Oct 2004 |
[ Download Map Set Data ] |
| Accession ID: |
cmf1104a |
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| Species: |
Zea mays (Maize) |
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| Map Type: |
Physical |
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| Map Units: |
bands |
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| Published On: |
12 November, 2004 |
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| Map Set Name: |
FPC Chr maize May 2006 |
[ Show Only This Set ] |
| Abbreviated Name: |
FPC Chr maize May 2006 |
[ Download Map Set Data ] |
| Accession ID: |
mzfpc0806-chr |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Physical |
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| Map Units: |
bp |
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| Published On: |
01 January, 2006 |
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| Map Set Name: |
FPC maize May 2006 |
[ Show Only This Set ] |
| Abbreviated Name: |
FPC maize May 2006 |
[ Download Map Set Data ] |
| Accession ID: |
mzfpc0806 |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Physical |
[ View Map Type Info ] |
| Map Units: |
bands |
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| Published On: |
01 January, 2006 |
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| Map Set Name: |
Bins |
[ Show Only This Set ] |
| Abbreviated Name: |
Bins |
[ Download Map Set Data ] |
| Accession ID: |
maize-bins |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Bin |
[ View Map Type Info ] |
| Map Units: |
bins |
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| Published On: |
02 February, 2005 |
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Description:
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Bins are segments of approximately 20 cM delimited by two fixed Core Markers (Gardiner et al., 1993). These bins are designated by a chromosome number followed by a two-digit decimal (e.g., 1.00, 1.01, 1.02, etc). The bin is an interval that includes all loci from the leftmost or top Core Marker to the next Core Marker. Placement of a locus to a bin is dependent on the precision of mapping data, and increases in certainty as markers increase in number or populations increase in size.
On the Gramene version of this map, the position of each core marker is based on the Maize UMC 1998 map. |
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| Map Set Name: |
CMM Cytogenetic FISH 2007 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cyto FISH 2007 |
[ Download Map Set Data ] |
| Accession ID: |
cytomaize |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Cytogenetic |
[ View Map Type Info ] |
| Map Units: |
cMc |
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| Published On: |
N/A |
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Description:
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FISH map from the Cytogenetic Map of Maize project. Data provided by Hank Bass. |
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| Map Set Name: |
IBM 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
IBM 2002 |
[ Download Map Set Data ] |
| Accession ID: |
ibm-2002 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 January, 2002 |
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| Map Set Name: |
IBM2 2008 Neighbors |
[ Show Only This Set ] |
| Abbreviated Name: |
IBM2 2008 Neighbors |
[ Download Map Set Data ] |
| Accession ID: |
ibm2-2008 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
N/A |
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Description:
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Neighbors 2008 maps were computed using the same algorithm as for previous versions, with manual review of values for chromosome ends. Unlike the 2005 version, this consensus genetic map includes only loci mapped in recombination experiments, and it excludes loci that were only mapped to the FPC maps. The frame for the IBM2 Neighbors is the IBM2 map used to anchor the B73 FPC contigs, in turn used to select the minimum tiling path for the B73 genome sequence project. This 2008 Neighbors includes some 15,000 loci, most with sequence-based probes, and some 10,000 had statistically defendable orders on source maps. These latter are separately represented in the Neighbors Frame maps. Contributions to Neighbors come from many sources. New locus additions come from the Genetic 2008 map provided by Ed Coe (1033 new loci); the ISU IBM Map7 provided by Pat Schnable (4647 new loci); NAM diversity maps from Mike McMullen (1045 new loci); and SSR B73 x Mo17 Davis (117 new loci). We used IBM2 FPC0507, a hybrid genetic-physical map, to position some 508 loci whose orders are not statistically well-defended on source maps, but are ordered on the July 2005 agarose FPC build (from Cari Soderlund, www.genome.arizona.edu/fpc/maize). In choosing the frame for the computation both the resolution power of a mapping panel, and the actual numbers of resolved coordinates were considered (for example, 3 loci with a coordinate of 21.1 on a particular chromosome map are counted only once). |
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| Map Set Name: |
Nested Association Mapping (NAM) 2008 |
[ Show Only This Set ] |
| Abbreviated Name: |
NAM 2008 |
[ Download Map Set Data ] |
| Accession ID: |
nam2008 |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
03 July, 2008 |
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Description:
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Maize NAM map as downloaded from the Panzea website.
From the Panzea FAQ:
Our collection of 5000 RILs in 25 populations (plus the pre-existing IBM RIL population derived from a cross of B73 and Mo17) is collectively referred to as our "maize Nested Association Mapping (NAM) population". NAM is a new approach to the mapping of genes underlying complex traits, in which the statistical power of QTL mapping is combined with the high (potentially gene-level) chromosomal resolution of association mapping. The RILs are "nested" in the sense that they all share a common parent, B73, but each population has a different alternate parent. The NAM strategy consists of genotyping a feasible number of (e.g., about 1000-2000) common parent specific SNPs in the entire mapping population, in combination with much higher resolution genotyping of the 26 parents (e.g., by sequencing the entire genome of all 26 parents). The common parent specific SNPs are either present only in B73 or are present in B73 and rare in the other parents. These are used to classify each chromosomal segment that they define in each RIL according to whether it derives from B73 or from the corresponding alternate parent. In this manner, the high resolution genotypic sequence data can be projected from the parents onto the RIL offspring, without the need to sequence all the offspring. An association analysis can then be performed across the entire population. This takes advantage of historical recombination in the ancestors of the 26 parents in order to map the genes responsible for a given trait, potentially down to gene-level resolution. The NAM concept is further explained and demonstrated via computer simulation in Yu et al. (2008). |
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| Map Set Name: |
BNL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
BNL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
bnl-1996 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
20 November, 1996 |
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Description:
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This is the maize BNL 96 map originally presented by MaizeDB. The data has now been incorporated into MaizeGDB. |
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| Map Set Name: |
UMC 1998 |
[ Show Only This Set ] |
| Abbreviated Name: |
UMC 1998 |
[ Download Map Set Data ] |
| Accession ID: |
umc-1998 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
08 January, 1998 |
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Description:
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This is the maize UMC 98 map originally presented by MaizeDB. The data has now been incorporated into MaizeGDB
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| Map Set Name: |
Cornell Wilson 1999 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell Wilson 1999 |
[ Download Map Set Data ] |
| Accession ID: |
cu-wilson-1999 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 December, 1999 |
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Description:
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Marker loci from several maize RFLP genetic maps were combined to facilitate comparison of the maize and rice genomes. The BNL 96 T232/CM RI (Burr et al., 1993) genetic map was selected to serve as framework. Newly mapped ISU markers, previously mapped markers from Ahn and Tanksley (1993), and markers retrieved from MaizeDB were positioned relative to the framework at LOD 2.0. Conflicting marker orders due to low LODs arising from tight linkage were sorted to the inclusion of comparatively mapped loci on the framework. ISU loci mapped in CO159/Tx303 RI (Matz et al. 1994) and markers retrieved from MaizeDB mapped onto the same population as above and/or Tx303/CO159 IF2 (Davis et al. 1994) were cross-referenced by common markers and placed to inferred positions. |
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| Map Set Name: |
SSR IBM 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
SSR IBM 2001 |
[ Download Map Set Data ] |
| Accession ID: |
ssr-ibm-2001 |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
Genetic |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
12 March, 2001 |
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Description:
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This is the SSR IBM map produced by the Maize Mapping Project (MMP) as originally presented in MaizeDB. The data has now been incorporated into MaizeGDB. |
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| Map Set Name: |
MISCU H123/AG19 BC1 QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
MISCU H123/AG19 BC1 QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
luh2003a |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
28 February, 2003 |
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Description:
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This map is based on a BC1S1 population derived from a cross between H123 and AG19. AG19 is a Supergold popcorn inbred developed by Ag Alumni Seed Improvement Association, Incorporated, whereas H123 is a dent corn inbred developed at Purdue University from the [B73(B73 X 84)] BC1 cross. The F1 was backcrossed to AG19 and the BC1 plants were selfed to generate BC1S1 lines. The map includes 80 SSR markers assigned to 18 linkage groups that comprised 963 cM. |
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| Map Set Name: |
Maize Bins QTL 2005 |
[ Show Only This Set ] |
| Abbreviated Name: |
Maize Bins QTL 2005 |
[ Download Map Set Data ] |
| Accession ID: |
maize-bins-qtl |
[ View Map Set In Matrix ] |
| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
11 August, 2005 |
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Description:
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Bins are segments of approximately 20 cM delimited by two fixed Core Markers (Gardiner et al., 1993). These bins are designated by a chromosome number followed by a two-digit decimal (e.g., 1.00, 1.01, 1.02, etc). The bin is an interval that includes all loci from the leftmost or top Core Marker to the next Core Marker. Placement of a locus to a bin is dependent on the precision of mapping data, and increases in certainty as markers increase in number or populations increase in size. On the Gramene version of this map, the position of each core marker is based on the Maize UMC 1998 map.
The Maize Bins QTL map displays all maize QTLs imported from Maize GDB. Those QTLs were originally curated in Maize GDB with minor modifications according Gramene SOPs. We acknowledge Carolyn Lawrence, Mary Polacco, Trent Seigfried, and Darwin Campbell in MaizeGDB for their collaboration and sharing of data.
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| Map Set Name: |
NCSU B73/Mo17 QTL 1992 |
[ Show Only This Set ] |
| Abbreviated Name: |
NCSU B73/Mo17 QTL 1992 |
[ Download Map Set Data ] |
| Accession ID: |
stc1992a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
30 November, 1992 |
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Description:
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This map is based on an F3 population derived from a cross between two elite maize inbred lines, B73 and Mo17. This cross produces superior hybrid performance and the parental lines, or lines derived from them, have been and are still used in commercial hybrids. Approximately 10 F4 plants were bulked and used to infer the genotype of the F3 parents. The map includes 9 isozyme loci and 67 RFLP loci. |
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| Map Set Name: |
UWM B73/Mo17 RFLP SSR QTL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
UWM B73/Mo17 QTL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
sem1996a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 January, 1996 |
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Description:
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Recombinant inbred lines (RILs) from the cross B73 X Mo17 were increased at the University of Wisconsin, Madison, USA, and were originally supplied by Charles Stuber and Lynn Senior at North Carolina State University. Mo17 is a phosphorus efficient genotype, and B73 is a phosphorus inefficient genotype. A total of 162 RILs were analyzed in this study.
The RIL population was previously genotyped with 196 RFLP, SSR, and isozyme markers. This genetic linkage map has 27 markers on chromosome 1, 14 on chromosome 2, 15 on chromosome 3, 23 on chromosome 4, 32 on chromosome 5, 21 on chromosome 6, 13 on chromosome 7, 17 on chromosome 8, 18 on chromosome 9, and 16 on chromosome 10. The map covers 1,703 cM with an average interval of 8.73 cM.
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| Map Set Name: |
INRA Io/F2 Composite QTL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
INRA Io/F2 Composite QTL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
cam1996a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 March, 1996 |
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Description:
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This maize genetic map was mainly based on expressed sequences, and it incorporates data from four segregating populations. The final integrated map included 275 loci and covered 1765 cM. Three recombinant inbred line populations were derived from the nonreciprocal crosses between three inbred lines. Among three inbred lines, F2 is a French early flint line, F252 is an American early dent line, and Io is a line from the Iodent group. The first RI population was derived from the cross between Io and F2, and has 145 RI lines. The second was derived from the cross between F252 and F2, with 129 RI line. The third was derived from the cross between Io and F252, with 152 RI lines. Another F2 population derived from the cross between Io and F2 with 95 individuals was also used to generate the composite map. |
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| Map Set Name: |
Iowa Mo17/H99 RI QTL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
Iowa Mo17/H99 RI QTL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
aud1996a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 May, 1996 |
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Description:
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This maize mapping population consisted of 186 recombinant inbred lines derived from the cross between two inbred lines Mo17 and H99. A linkage map contained 101 loci detected by 93 RFLP probes and 1 genetic marker for cob color (P1), and spanned 1408 cM with a mean density of 15.4 cM. |
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| Map Set Name: |
CIMMYT Ac7729/Ac7643S QTL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
CIMMYT Ac7729/Ac7643S QTL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
rij1996a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
27 June, 1996 |
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Description:
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This maize mapping population consisted of 234 F2 individuals derived from the cross between Ac7643S5 and Ac7729/TZSRWS5. The two maize inbreds used as parental lines were tropical S5 lines derived from Tuxpeno germplasm. P1, Ac7643S5, was derived from Population 43 (La Posta) and P2, Ac7729/TZSRWS5 from Population 29 (Tuxpeno Caribe). Compared to P2, P1 yields well under drought and has a short ASI (anthesis-sinking interval), while P2 is low yielding under drought and has a long ASI. A linkage map contained 142 loci and spanned 1760 cM with a mean density of 12.5 cM. |
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| Map Set Name: |
Bologna Os420/Iab78 QTL 1998 |
[ Show Only This Set ] |
| Abbreviated Name: |
Bologna Os420/Iab78 QTL 1998 |
[ Download Map Set Data ] |
| Accession ID: |
tur1998a |
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| Species: |
Zea mays (Maize) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
22 April, 1998 |
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Description:
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The maize genetic map was constructed using 80 F3:4 families derived from a cross between Os420 and IABO78, scored with 106 RFLP maker loci. The critical LOD score for the test of independence of pairs of markers was set at 3.0. |
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