ID | 50659 |
---|---|
Name | AQFY001 (QTL ACCESSION ) |
Synonyms (1) | AQFY001-DTHD |
Published Symbol | Hd6 |
TO TERM | TO:0000137 (days to heading) |
Trait Name | days to heading |
Trait Symbol | DTHD |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | Linkage analysis with P1-derived artificial chromosome clone-derived DNA markers delimited Hd6 to a 26.4-kb genomic region. A gene encoding the alpha subunit of protein kinase CK2 (CK2 alpha) was identified in this region. The Nipponbare allele of CK2 alpha contains a premature stop codon, and the resulting truncated product is undoubtedly nonfunctional. Genetic complementation analysis revealed that the Kasalath allele of CK2 alpha increases days-to-heading. |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | AQFY001 |
Chromosome | 3 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 31,325,281-31,397,499 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 3 | 140.1-140.1 cM | View Comparative Map | |||
|
Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | RFLP | R2856 | qtl_marker |
Oryza sativa | RFLP | R2404 | qtl_marker |
Oryza sativa | RFLP | C2540 | qtl_marker |
Oryza sativa | RFLP | E3180S | qtl_marker |
Oryza sativa | RFLP | L119 | qtl_marker |
Oryza sativa | RFLP | G1015 | qtl_marker |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Plant Structure | inflorescence | PO:0009049 | Search |
Plant Growth and Development Stage | inflorescence emergence stage | PO:0007041 | Search |
Growth Stage | 06-heading stage | GRO:0007044 | Search |
Environment | unknown environment | EO:0007403 | Search |
Plant Growth and Development Stage | sporophyte reproductive stage | PO:0007130 | Search |
Trait | days to heading | TO:0000137 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |