Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
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Accession | GR:0101321 | ||||||||||||
Gene Symbol | APL3 | ||||||||||||
Gene Name | ADP-glucose Pyrophosphorylase large subunit 3 | ||||||||||||
Synonyms (11) |
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E.C. Numbers (1) | 2.7.7.27 | ||||||||||||
Pathway Reactions (1) | Glucose-1-phosphate adenylyltransferase | ||||||||||||
Chromosome No. | 5 | ||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||
Has Phenotype | no | ||||||||||||
Description | This gene encodes for the large subunit of enzyme ADP-glucose pyrophosphorylase (AGP). The enzyme regulates starch biosynthesis and catalyzes the reaction ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose. The APL3 peptide is localized to the endosperm cell amyloplast. It forms spatiotemporal heterotetramer ADP-glucose pyrophosphorylase enzyme complex together with small subunits. The APL3 dimer interacts with APS1 (GR:0101317) dimers to form the heterotetramer enzyme complex in developing endosperm cell amyloplast. |
# | Gene-1 | Gene-1 object | Mode of action | Gene-2 | Gene-2 object | Evidence | Evidence code | Comment |
---|---|---|---|---|---|---|---|---|
1 | APL3 | protein | binds | APS1 | protein | Lee-S-K et al., 2007 | IEP | Heterotetramer formation in endosperm amyloplast |
2 | APL3 | protein | binds | APL3 | protein | Lee-S-K et al., 2007 | IEP | Dimer formation |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 28,809,149-28,814,632bp | View Comparative Map | |||
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Map Position [ View in Marker DB ] | |||||
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# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 5 | 28809149 bp | 28814632 bp | grjp2009a-5-GR:0101321 |
Plant Structure | endosperm (PO:0009089) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | glucose-1-phosphate adenylyltransferase activity (GO:0008878), nucleotidyltransferase activity (GO:0016779) |
Biological Process | biosynthetic process (GO:0009058), starch biosynthetic process (GO:0019252) |
Environment | sodium chloride regimen (EO:0007048), long day length regimen (EO:0007199), short day length regimen (EO:0007200), tissue culture growth media (EO:0007266), watering regimen (EO:0007383), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 28,809,149 | 28,814,632 | ~160K SNPs x 20 accessions (McNally 2... | 7 | Search for SNPs |
chr5 | 28,809,149 | 28,814,632 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr5 | 28,809,149 | 28,814,632 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr5 | 28,809,149 | 28,814,632 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr5 | 28,809,149 | 28,814,632 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |