Oryza sativa gene "bierf2" (GR:0020002)

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Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Accession

GR:0020002

Gene Symbol

bierf2

Gene Name

BTH-induced ERF transcriptional factor 2

Synonyms (2)

OsBIERF1

LOC_Os01g58420

E.C. Numbers (0)

Pathway Reactions (0)

Chromosome No.

Gene Type

CDS (Protein coding)

Has Phenotype

Description

CLASS II ethylene responsive transcriptional factor.

Curator Comment

Encodes a protein of 235 amino acids, with a calculated weight of 24.3kD. bierf2 contains a 58 amino acid ERF domain and an ERF-associated amphiphilic repression motif.

Alleles (1)

bierf2

Germplasm (1)

Nipponbare

Sequences (4)

Protein

Gramene Protein:

Q5MFV2

Nucleotide (DNA)

GenBank Nucleotide:	AY831393
Rice Ensembl Gene:	LOC_Os01g58420
IRGSP Gene:	Os01g0797600

Gene-To-Gene Interactions (0)

Gene Interactions (0)

Map Positions (1)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 1

33,765,935-33,767,041bp

View Comparative Map

Details

CMap Preview

Gene Map Positions (1)

Map Position [ View in Marker DB ]
#	Map Set Name	Linkage Group	Start Position	Stop Position	CMap Feature Acc
1	Rice japonica MSU6	Chr. 1	33765935 bp	33767041 bp	grjp2009a-1-GR:0020002

Associated Ontologies (11)

Plant Growth and Development Stage	leaf production stage (PO:0007133)
Cereal Plant Growth Stage	02-seedling (GRO:0007047)
Cellular Component	nucleus (GO:0005634), plastid (GO:0009536)
Molecular Function	sequence-specific DNA binding transcription factor activity (GO:0003700)
Biological Process	regulation of transcription, DNA-dependent (GO:0006355)
Environment	flood water (EO:0007172), tissue culture growth media (EO:0007266), growth chamber study (EO:0007269), watering regimen (EO:0007383), unknown environment (EO:0007403)

Associated QTL (0)

Database Cross-References (0)

Literature (2)

Images (0)

SNPs (10)

Chr	Start	Stop	Exp	Num. SNP Positions
chr1	33,765,935	33,767,041	~160K SNPs x 20 accessions (McNally 2...	0
chr1	33,765,935	33,767,041	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr1	33,765,935	33,767,041	Huang X, et al, Nat Genetics 2010 Nov...	5	Search for SNPs
chr1	33,765,935	33,767,041	RiceDiversity 44K SNP assay, 34 trait...	5	Search for SNPs
chr1	33,765,935	33,767,041	RiceDiversity 44K SNP assay, 34 trait...	0