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| Map Set Name: |
JHPRC Rei/Yamd QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
JHPRC Rei/Yamd QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
yos2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
20 July, 2002 |
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Description:
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This map is constructed using double haploid lines derived from the cross between Reiho (a cooking variety) and Yamada-nishiki (a sake-brewing variety). The map consists of 145 markers, including RAPD, AFLP and SSR markers. |
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| Map Set Name: |
CNRRI XeiB/Mil46 RI QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNRRI XeiB/Mil46 RI QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
xij2002a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
31 July, 2002 |
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Description:
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A recombinant inbred line (RIL) population consisting of 210 lines was derived from the cross Xieqingzao B/Miyang 46, in which Xieqingzao B is the maintainer line of CMS-DA Xieqingzao A, and Miyang 46 is the restorer line. A linkage map consisting of 129 RFLP and SSLP markers was constructed. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Professor Kangle Zheng. |
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| Map Set Name: |
CNNJAU Tai65/Bhad QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNNJAU Tai65/Bhad QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
wac2002a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
31 December, 2002 |
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Description:
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A F2 population consisting of 96 lines was derived from the cross between a japonica cultivar Taichung 65 and an indica cultivar Bhadua. A linkage map consisting of 94 RFLP markers was constructed. |
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| Map Set Name: |
CNRRI Zh97B/Mil46 RI QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNRRI Zh97B/Mil46 RI QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
zhj2002a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
31 December, 2002 |
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Description:
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A recombinant inbred line (RIL) population consisting of 209 F7lines was derived from the cross Zhenshan 97B/Milyang 46. A linkage map consisting of 158 DNA markers (122 RFLP and 36 SSLP) was constructed. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Professor Kangle Zheng. |
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| Map Set Name: |
TTU IR64/Orufi RI QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
TTU IR64/Orufi RI QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
ngb2003a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
28 February, 2003 |
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Description:
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This map is based on a cross between O. sativa cv. IR64 and the wild species, O. rufipogon (Acc IRGC 106424). A subset of 171 F6 recombinant inbred lines (RILs), selected randomly from a population of 312 lines was used for genotyping. The map includes 151 markers, mainly RFLP and SSR markers. |
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| Map Set Name: |
JRGP Nip/Kas F2 QTL 2000 |
[ Show Only This Set ] |
| Abbreviated Name: |
JRGP Nip/Kas F2 QTL 2000 |
[ Download Map Set Data ] |
| Accession ID: |
rgp2000a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
26 March, 2003 |
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Description:
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This is an updated version of the map reported by Kurata et al. (1994) and Harushima et al. (1998). It uses an F2 population of 186 plants from a cross between the cultivars Nipponbare (japonica) and Kasalath (indica). A total of 3267 markers were located covering 1530.4 cM. Marker names ending with the letter 'S' indicate that the 3' UTR of a cDNA fragment was used as a probe rather than the whole insert. The centromere position of chromosome 10 has been updated to reflect the new estimate given by Cheng et al. (2001). |
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| Map Set Name: |
CIRAD IR64/Azu DH QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
CIRAD IR64/Azu DH QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
sac2003a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 March, 2003 |
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Description:
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The mapping population consists of 106 of the 135 doubled haploid lines derived via anther culture from an inter-subspecific cross between indica cultivar IR64 and tropical japonica cultivar Azucena (Guiderdoni et al, 1992). Compared to the initial map from Huang et al (1995), it includes 349 markers distributed as follow: 233 markers from a previous map based on data obtained at IRRI, IRD and CIRAD, 131 markers mapped by Cirad and IRD in the framework of the EGRAM programme (European Comparative Gramineae Mapping Programme), and 7 RGA mapped by Cirad. The repartition of the markers by species is as follow: 214 rice markers, 14 rice isozymes, 16 rice RAPDs, 35 maize markers, 38 sorghum markers, 25 oat markers, 6 barley markers, 4 wheat markers, 3 sugarcane markers, and 3 from unknown origin. The EGRAM marker and map data for this population are kindly provided by O. Garsmeur (Cirad), L. Grivet (Cirad) and M. Lorieux (IRD). The RGA markers were added by O. Garsmeur, C. Sallaud, R. Berruyer D. and Tharreau (Cirad). This dataset was kindly provided by Dr. D. Tharreau. |
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| Map Set Name: |
IRRI RD23/Olong F2 QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRRI RD23/Olong F2 QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
huf2003a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
01 April, 2003 |
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Description:
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A F2 population consisting of 228 lines was derived from the cross between O. sativa cultivar RD23/an unnamed O. longistaminata accession with long and strong rhizomes. A linkage map consisting of 181 well distributed SSR markers was constructed. The marker and map data for this population are kindly provided by Dr. Zhikang Li. |
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| Map Set Name: |
IRRI Mil23/Aki RI QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRRI Mil23/Aki RI QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
fuk2003a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
11 April, 2003 |
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Description:
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A recombinant inbred line (RIL) population consisting of 191 lines was derived from the cross of Milyang 23/Akihikari. Milyang23, which is an indica semi-dwarf Korean cultivar, was often used in Japan as the parental strain for the breeding of high yielding rice cultivar. Akihikari is a japonica cultivar with a large number of panicles per plant and a relatively high yield. A linkage map consisting of 165 RFLP markers was constructed. The marker and map data for this population were kindly provided by Dr. Yoshimichi Fukuta. |
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| Map Set Name: |
IRRI IR64/Azu DH QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRRI IR64/Azu DH QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
raj2003a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
14 April, 2003 |
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Description:
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The mapping population consists of doubled haploid lines derived via anther culture from an inter subspecific cross between indica cultivar IR64 and tropical japonica cultivar Azucena. Compared to previous IRRI RFLP map, this updated map includes 57 PCR-based markers derived using RGA primers, 46 RFLP markers from RGA RFLP probes, and 15 RFLP markers from DR gene probes. A total of 302 markers were placed on the map. The marker and map data for this population are kindly provided by Drs. L. Leung and J. Leach. |
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| Map Set Name: |
JNIAR Aki/Kosh DH QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
JNIAR Aki/Kosh DH QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
yam2003c |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
14 April, 2003 |
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Description:
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This map is based on a cross between two temperate japonica rice varieties, Akihikari and Koshihikari. A DH population including DH 212 lines was derived from anther culture of F1 plants. The map includes 135 RFLP markers and 34 RAPD markers. The marker and map data for this population are kindly provided by Dr. Masahiro Yano. |
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| Map Set Name: |
CNHZAU Zh97/Ming63 RI QTL 2002 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNHZAU Zh97/Ming63 RI QTL 2002 |
[ Download Map Set Data ] |
| Accession ID: |
xiy2002a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
16 April, 2003 |
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Description:
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The mapping population consisted of 240 F9 recombinant inbred lines (RILs) derived by single-seed descendent from a cross between Zhenshan 97 and Minghui 63, the parents of Shanyou 63, an elite rice hybrid. Data for a total of 213 markers including 168 RFLPs, 45 SSRs and one morphological trait, detecting a total of 221 loci, were obtained to construct the linkage map. The total map length was 1796 cM; the average distance between two markers 8.7 cM. The marker and map data for this population are kindly provided by Dr. Qifa Zhang. |
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| Map Set Name: |
Cornell Jef/Oruf BC QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell Jef/Oruf BC QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
thm2004a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
08 May, 2003 |
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Description:
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The mapping population consisted of 353 (BC2F1) plants derived from a cross between Jefferson and O. rufipogon (IRGC 105491). The O. sativa cultivar Jefferson, a long-grain tropical japonica cultivar, has been used as the recurrent parent. It is a high-yielding variety, with a semi-dwarf plant type, a high level of disease resistance, early maturity, and good grain quality. The donor parent, O. rufipogon (IRGC 105491), is an accession of the presumed wild relative of rice and has been previously chosen to be a common donor parent for multiple wild QTL studies. The linkage map consisted of 153 microsatellite and RFLP markers distributed along 12 chromosomes. The average intermarker distance was 10.3 cM and the total distance was 1457 cM. |
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| Map Set Name: |
IRRI Lem/Teq RI QTL 2001 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRRI Lem/Teq RI QTL 2001 |
[ Download Map Set Data ] |
| Accession ID: |
liz2001a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
11 May, 2003 |
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Description:
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A recombinant inbred line (RIL) population consisting of 254 F10 lines was derived from the cross Lemont/Teqing. A linkage map consisting of 272 markers (182 RFLP, 87 SSLP, and 3 phenotypic markers) was constructed. The map has been updated based on recent data from the same lab. The marker and map data for this population are kindly provided by Dr. Zhikang Li.
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| Map Set Name: |
NIAS Sas/Hab BCIL QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
NIAS Sas/Hab BCIL QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
yam2003a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
25 May, 2003 |
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Description:
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A BCIL population consisting of 85 lines was derived from the cross of Sasanishiki/Habataki//Sasanishiki//Sasanishiki(Sasanishiki x Habataki). Habataki is a semi-dwarf indica cultivar with a large number of spikelets per panicle. Sasanishiki is a japonica cultivar with a large number of panicles per plant and properties that make it more suitable for consumption in Japan. A linkage map consisting of 238 RFLP markers was constructed. The marker and map data for this population were kindly provided by Dr. M. Yano. |
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| Map Set Name: |
M202/IR50 UCD QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
M202/IR50 UCD QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
anv2003a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
02 June, 2003 |
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Description:
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A recombinant inbred line (RIL) population consisting of 191 F5 lines was derived from the cross between a temperate japonica, M-202, and a tropical indica, IR50. A linkage map consisting of 181 loci produced by 175 microsatellite markers was constructed. The marker and map data for this population are kindly provided by Dr. David J. Mackill. |
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| Map Set Name: |
NIAS Kosh/Kas BIL QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
NIAS Kosh/Kas BIL QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
yam2003b |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
02 June, 2003 |
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Description:
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A population consisting of 183 BC1F7 was developed by the single-seed descent method from a backcross of Koshihikari/Kasalath/Koshihikari. A linkage map consisting of 162 RFLP markers was constructed. The marker and map data for this population were kindly provided by Dr. Masahiro Yano. |
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| Map Set Name: |
JKU Aso/IR24 QTL 1996 |
[ Show Only This Set ] |
| Abbreviated Name: |
JKU Aso/IR24 QTL 1996 |
[ Download Map Set Data ] |
| Accession ID: |
tsh1996a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
24 June, 2003 |
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Description:
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An F6 and F7 recombinant inbred population consisting of 165 lines was developed by the single-seed descent method from a cross between Asominori/IR24. Asominori is a japonica cultivar, whereas IR24 is an indica variety. A subset of 71 RI lines was selected and used for RFLP analysis. A linkage map contained 375 markers and total map distance was 1275.4 cM. |
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| Map Set Name: |
CNZU IR1552/Azu RI QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNZU Azu/IR1552 RI QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
zhb2003a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
30 November, 2003 |
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Description:
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An F9 recombinant inbred (RI) population consisting of 150 lines was developed by the single-seed descent method from a cross between Azucena/IR1552. A molecular map of the RI population was generated by mapping 103 RFLP, 104 AFLP, 27 SSR, and 12 candidate genes. This version is the update to the previous map set, Zhejian IR1552/Azucena RI RFLP QTL 2001. |
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| Map Set Name: |
Cornell IR64/IRG105 QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
Cornell IR64/IRG105 QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
see2003a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
30 November, 2003 |
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Description:
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This map is based on a BC2F2 population derived from an interspecific cross between Oraza sativa (cv. IR64) and O. rufipogon (IRGC 105491). O. rufipogon (IRGC 105491) is a wild relative of modern rice originating from Malaysia. A total of 165 markers consisting of 131 SSRs and 34 RFLPs have been used to construct the genetic linkage map. |
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| Map Set Name: |
IRRI IR622/IR600 QTL 2003 |
[ Show Only This Set ] |
| Abbreviated Name: |
IRRI IR622/IR600 QTL 2003 |
[ Download Map Set Data ] |
| Accession ID: |
ros2003a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
30 November, 2003 |
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Description:
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A population consisting of 165 BC3F3 families was developed from a cross between IR62266-42-6-2 (abbreviated as IR62266) and IR60080-46A (abbreviated as IR60080). IR62266 is an indica lowland genotype with high OA capacity, whereas IR60080 is an improved tropical japonica genotype with a well-developed root system but a poor OA. A total of 102 RFLPs, 59 microsatellites and 6 candidate genes were mapped on 12 linkage groups corresponding to the 12 rice chromosomes. The total map length measured 1370 cM with an average inter-marker distance of 7.7 cM. |
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| Map Set Name: |
CNSIPPE Non/Kos QTL 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNSIPPE Non/Kos QTL 2004 |
[ Download Map Set Data ] |
| Accession ID: |
lih2004a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
31 January, 2004 |
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Description:
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The mapping population consisted of 133 F2 plants derived from a cross between Nona Bokra and Koshihikari. Nona Bokra is a well-known high salt tolerance indica variety, whereas Koshihikari is a salt susceptible elite japonica variety. A linkage map containing 154 RFLP markers covered all 12 linkage groups and spanned 1704.4 cM of rice genome with an average interval of 12.3 cM between marker loci. The marker and map data were kindly provided by Dr. H. X. Lin. |
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| Cross-references: |
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| Map Set Name: |
JUT IR36/Genj QTL 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
JUT IR36/Genj QTL 2004 |
[ Download Map Set Data ] |
| Accession ID: |
nek2004b |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
19 February, 2004 |
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Description:
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The mapping population consisted of 100 RILs (F5) derived from a cross between IR36 and Genjah Wangkal . IR36 is a high-tillering elite indica cultivar, while Genjah Wangkal (IRRI accession no. IRGC 35652) is a tropical japonica landrace from Indonesia that has been used as a donor of low-tillering in the breeding of some New Plant Type lines. The linkage map consisted of 132 markers (49 SSR, 83 RFLP markers) distributed along 12 chromosomes. The average intermarker distance was 10.1 cM and the total distance was 1297 cM. The marker and map data for this population were kindly provided by Dr. K. Nemoto. |
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| Cross-references: |
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| Map Set Name: |
CNHZAU Zhe97/Wuy2 QTL 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
CNHZAU Zhe97/Wuy2 QTL 2004 |
[ Download Map Set Data ] |
| Accession ID: |
jig2004a |
[ View Map Set In Matrix ] |
| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
[ View Map Type Info ] |
| Map Units: |
cM |
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| Published On: |
28 February, 2004 |
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Description:
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The mapping population consisted of 190 double haploid (DH) lines derived from the cross between Zhenshan97/Wuyujing2. Zhenshan97 is an indica cultivar, whereas Wuyujing2 is a stay-green japonica cultivar. A linkage map contained 179 SSR marker loci and total map distance was 1849.4 cM with an average interval of 9.4 cM between adjacent marker loci. The marker and map data were kindly provided by Dr. Qifa Zhang. |
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| Map Set Name: |
NDSU EM93/SS18 BC QTL 2004 |
[ Show Only This Set ] |
| Abbreviated Name: |
NDSU EM93/SS18 BC QTL 2004 |
[ Download Map Set Data ] |
| Accession ID: |
gux2004a |
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| Species: |
Oryza sativa (Oryza sativa) |
[ View Species Info ] |
| Map Type: |
QTL |
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| Map Units: |
cM |
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| Published On: |
01 March, 2004 |
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Description:
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A backcross was made to develop the mapping population EM93-1//EM93-1/SS18-2 (BC1). SS18-2 is a wild-like, indica type of weedy rice originating from Thailand that has a red pericarp/testa color. SS18-2 seeds have mainly hull-imposed dormancy and heritability for this trait ranged from 0.64 to 0.95 in seeds after-ripened for 0 to 60 days. EM93-1 is a nondormant, short growth duration, indica type of breeding line. A weedy rice framework genetic map was constructed on the basis of a primary segregating population of 156 BC1 individuals. The linkage map consists of 151 SSR markers distributed along 12 chromosomes and a red pericarp/testa color gene Rc. The average intermarker distance was 13.5 cM and the total distance was 1900 cM. |
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