Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history
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Gramene is produced in collaboration with Ensembl Plants

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Gene: CCA1 AT2G46830

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Description

circadian clock associated 1 [Source:NCBI gene (formerly Entrezgene);Acc:819296]

Gene Synonyms

AtCCA1, circadian clock associated 1, F19D11.11, MYB-RELATED DNA BINDING PROTEIN

Location

Chromosome 2: 19,245,591-19,248,915 forward strand.

About this gene

This gene has 3 transcripts (splice variants), 142 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CCA1-201	AT2G46830.1	2355	608aa	AT2G46830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VLU6 P92973	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CCA1-202	AT2G46830.2	2628	526aa	AT2G46830.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VMC5	-	-
CCA1-203	AT2G46830.3	1882	526aa	AT2G46830.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VMC5	-	-

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Pan-taxonomic Compara

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Genomic alignments (Not available)

Gene tree

Orthologues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data