Arabidopsis thaliana (TAIR10) ▼ 
Summary
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circadian clock associated 1 [Source:NCBI gene (formerly Entrezgene);Acc:819296]
AtCCA1, circadian clock associated 1, F19D11.11, MYB-RELATED DNA BINDING PROTEIN
Chromosome 2: 19,245,591-19,248,915 forward strand.
This gene has 3 transcripts (splice variants), 142 orthologues and 1 paralogue.
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Showing the top 50 hits from Europe PubMed Central
| PubMed ID | Title | Authors | Journal |
|---|---|---|---|
| 38074475 | Elucidating the Temporal Patterns of Gene Expression in the Inferred Regulatory Interactions of GmCOL1b in Glycine max. | Alcantara M, Iftikhar H, Dzheyranyan D, Kagan K, Abbasi P, Alamilla A, Ayala N, Baca T, Benoit V, Clausen N, Coto C, Guerrero C, Hernandez Catalan E, Hurtado S, Lopez A, Lopez J, Majarian N, Mesfin N, Mishegyan A, Mkrtchyan G, Ordonez A, Pachanyan A, Pelayo T, Rosas A, Rowsey K, Sharma E, Sharma S, Van Grinsven S, Hanzawa Y. | MicroPubl Biol 2023 2023 |
| 37908495 | Clarifying the Temporal Dynamics of the Circadian Clock and Flowering Gene Network Using Overexpression and Targeted Mutagenesis of Soybean EARLY FLOWERING 3-1 ( GmELF3-1 ). | Alcantara M, Iftikhar H, Kagan K, Dzheyranyan D, Abbasi P, Alamilla A, Ayala N, Baca T, Benoit V, Clausen N, Coto C, Guerrero C, Hernandez Catalan E, Hurtado S, Lopez A, Lopez J, Majarian N, Mesfin N, Mishegyan A, Mkrtchyan G, Ordonez A, Pachanyan A, Pelayo T, Rosas A, Rowsey K, Sharma E, Sharma S, Van Grinsven S, Hanzawa Y. | MicroPubl Biol 2023 2023 |
| 37995186 | Circadian clock factors regulate the first condensation reaction of fatty acid synthesis in Arabidopsis. | Kim SC, Edgeworth KN, Nusinow DA, Wang X. | Cell Rep 42 (12) 2023 |
| 38319968 | The interplay between the circadian clock and abiotic stress responses mediated by ABF3 and CCA1/LHY. | Liang T, Yu S, Pan Y, Wang J, Kay SA. | Proc Natl Acad Sci U S A 121 (7) 2024 |
| 38255756 | A Multi-Omics Analysis Revealed the Diversity of the MYB Transcription Factor Family's Evolution and Drought Resistance Pathways. | Zhang F, Ma J, Liu Y, Fang J, Wei S, Xie R, Han P, Zhao X, Bo S, Lu Z. | Life (Basel) 14 (1) 2024 |
| 34723145 | The Arabidopsis MYB5 transcription factor interacts with CASEIN KINASE2 BETA3 subunit in a yeast two-hybrid system. | Napoli RS, Allen PJ, Parish RW, Li SF. | MicroPubl Biol 2021 2021 |
| 38053291 | Genome-wide in-locus epitope tagging of Arabidopsis proteins using prime editors. | Hong C, Han JH, Hwang GH, Bae S, Seo PJ. | BMB Rep 57 (1) 2024 |
| 38386103 | Unlocking allelic variation in circadian clock genes to develop environmentally robust and productive crops. | Dwivedi SL, Quiroz LF, Spillane C, Wu R, Mattoo AK, Ortiz R. | Planta 259 (4) 2024 |
| 37705303 | A Small-Molecule Modulator Affecting the Clock-Associated PSEUDO-RESPONSE REGULATOR 7 Amount. | Uehara TN, Takao S, Matsuo H, Saito AN, Ota E, Ono A, Itami K, Kinoshita T, Yamashino T, Yamaguchi J, Nakamichi N. | Plant Cell Physiol 64 (11) 2023 |
| PPR829848 | Synchronization of Circadian Clock Gene Expression inArabidopsisandHyaloperonospora arabidopsidisand its Impact on Host-Pathogen Interactions | Telli O, Göl D, Jin W, Cevher-Keskin B, Hong Y, McDowell JM, Studholme DJ, Tör M. | preprint (2024) |
| 37951242 | early maturity 7 promotes early flowering by controlling the light input into the circadian clock in barley. | Helmsorig G, Walla A, Rütjes T, Buchmann G, Schüller R, Hensel G, von Korff M. | Plant Physiol 194 (2) 2024 |
| PPR769284 | Quantitative Modeling of the Short-Term Response to Nitrogen Availability that Coordinates Early Events in Lateral Root Initiation | Gaudinier A, Van den Broeck L, Moreno-Risueño M, Rodriguez-Medina J, Sozzani R, Brady SM. | preprint (2023) |
| PMC10671209 | Characteristics and Functions of MYB (v-Myb avivan myoblastsis virus oncogene homolog)-Related Genes in Arabidopsis thaliana | Genes (Basel) 14 (11) 2023 | |
| 37552691 | Circadian Clock Controls Root Hair Elongation through Long-Distance Communication. | Ikeda H, Uchikawa T, Kondo Y, Takahashi N, Shishikui T, Watahiki MK, Kubota A, Endo M. | Plant Cell Physiol 64 (11) 2023 |
| PPR701896 | PharaohFUN: PHylogenomic Analysis foR plAnt prOtein History and FUNction elucidation | Ramos-González M, Ramos-González V, Arvanitidou C, Hernández-García J, García-González M, Romero-Campero FJ. | preprint (2023) |
| 38267085 | Diurnal Rhythms in the Red Seaweed Gracilariopsis chorda are Characterized by Unique Regulatory Networks of Carbon Metabolism. | Lee J, Yang JH, Weber APM, Bhattacharya D, Kim WY, Yoon HS. | Mol Biol Evol 41 (2) 2024 |
| 37091499 | Regulatory networks of hormone-involved transcription factors and their downstream pathways during somatic embryogenesis of Arabidopsis thaliana. | Khadem A, Moshtaghi N, Bagheri A. | 3 Biotech 13 (5) 2023 |
| 38255990 | The Roles of Circadian Clock Genes in Plant Temperature Stress Responses. | Jang J, Lee S, Kim JI, Lee S, Kim JA. | Int J Mol Sci 25 (2) 2024 |
| PPR763710 | Crosstalk between salicylic acid signaling and the circadian clock promotes an effective immune response | Fraser O, Cargill SJ, Spoel SH, van Ooijen G. | preprint (2023) |
| 38069157 | The Roles of the PSEUDO-RESPONSE REGULATORs in Circadian Clock and Flowering Time in Medicago truncatula. | Wang X, Zhang J, Liu X, Kong Y, Han L. | Int J Mol Sci 24 (23) 2023 |
| 37836084 | Comparative Analysis of Circadian Transcriptomes Reveals Circadian Characteristics between Arabidopsis and Soybean. | Wang X, Hu Y, Wang W. | Plants (Basel) 12 (19) 2023 |
| 38143581 | Circadian rhythms and circadian clock gene homologs of complex alga Chromera velia. | Richtová J, Bazalová O, Horák A, Tomčala A, Gonepogu VG, Oborník M, Doležel D. | Front Plant Sci 14 2023 |
| 37555432 | Compartmentation of photosynthesis gene expression in C4 maize depends on time of day. | Borba AR, Reyna-Llorens I, Dickinson PJ, Steed G, Gouveia P, Górska AM, Gomes C, Kromdijk J, Webb AAR, Saibo NJM, Hibberd JM. | Plant Physiol 193 (4) 2023 |
| 37676570 | LNKs-RVEs complex ticks in the circadian gating of plant temperature stress responses. | Xu X, Xie Q. | Stress Biol 3 (1) 2023 |
| 38254983 | GIGANTEA Unveiled: Exploring Its Diverse Roles and Mechanisms. | Liu L, Xie Y, Yahaya BS, Wu F. | Genes (Basel) 15 (1) 2024 |
| 36149326 | Epidermal CCA1 and PMR5 contribute to nonhost resistance in Arabidopsis. | Maeda N, Noguchi T, Nakamichi N, Suzuki T, Ishikawa A. | Biosci Biotechnol Biochem 86 (12) 2022 |
| 38585015 | Flowering genes identification, network analysis, and database construction for 837 plants. | Wu T, Liu Z, Yu T, Zhou R, Yang Q, Cao R, Nie F, Ma X, Bai Y, Song X. | Hortic Res 11 (4) 2024 |
| PPR599763 | CONSTANS alters the circadian clock inArabidopsis thaliana | de los Reyes P, Romero-Campero FJ, Gao H, Serrano-Bueno G, Romero JM, Valverde F. | preprint (2023) |
| 37481743 | Environmental F actors coordinate circadian clock function and rhythm to regulate plant development. | Zhang Y, Ma Y, Zhang H, Xu J, Gao X, Zhang T, Liu X, Guo L, Zhao D. | Plant Signal Behav 18 (1) 2023 |
| 35355885 | Enhancement of Arabidopsis growth by non-24 hour day-night cycles. | Yamamoto Y, Tabata K. | Plant Direct 6 (3) 2022 |
| 36631969 | Root PRR7 Improves the Accuracy of the Shoot Circadian Clock through Nutrient Transport. | Uemoto K, Mori F, Yamauchi S, Kubota A, Takahashi N, Egashira H, Kunimoto Y, Araki T, Takemiya A, Ito H, Endo M. | Plant Cell Physiol 64 (3) 2023 |
| 36814117 | GIGANTEA-ENHANCED EM LEVEL complex initiates drought escape response via dual function of ABA synthesis and flowering promotion. | Bader ZE, Bae MJ, Ali A, Park J, Baek D, Yun DJ. | Plant Signal Behav 18 (1) 2023 |
| PMC10671646 | The Homeodomain–Leucine Zipper Subfamily I Contributes to Leaf Age- and Time-Dependent Resistance to Pathogens in Arabidopsis thaliana | Int J Mol Sci 24 (22) 2023 | |
| PPR579575 | Water shortage reducesPHYTOCHROME INTERACTING FACTOR 4, 5and3expression and shade avoidance in Arabidopsis | Semmoloni M, Rojas CC, Yan Y, Cao X, Casal JJ. | preprint (2022) |
| PPR775310 | Seasonality adaptation patterns of the natural Arabidopsis leaf microbiome over several plant generations are shaped by environmental factors | Mahmoudi M, Almario J, Lutap K, Nieselt K, Kemen E. | preprint (2023) |
| 37811362 | Myb-like transcription factors have epistatic effects on circadian clock function but additive effects on plant growth. | Hughes CL, Harmer SL. | Plant Direct 7 (10) 2023 |
| 37489402 | Epigenetic Regulation in Heterosis and Environmental Stress: The Challenge of Producing Hybrid Epigenomes to Face Climate Change. | Duarte-Aké F, Us-Camas R, De-la-Peña C. | Epigenomes 7 (3) 2023 |
| 37894886 | Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs. | Dwivedi SL, Quiroz LF, Reddy ASN, Spillane C, Ortiz R. | Int J Mol Sci 24 (20) 2023 |
| 36257367 | Genome-wide analysis of long non-coding RNAs under diel light exhibits role in floral development and the circadian clock in Arabidopsis thaliana. | Yadav VK, Sawant SV, Yadav A, Jalmi SK, Kerkar S. | Int J Biol Macromol 223 (pt b) 2022 |
| 37391536 | Dim artificial light at night alters gene expression rhythms and growth in a key seagrass species (Posidonia oceanica). | Dalle Carbonare L, Basile A, Rindi L, Bulleri F, Hamedeh H, Iacopino S, Shukla V, Weits DA, Lombardi L, Sbrana A, Benedetti-Cecchi L, Giuntoli B, Licausi F, Maggi E. | Sci Rep 13 (1) 2023 |
| 37567911 | Characterizing the circadian connectome of Ocimum tenuiflorum using an integrated network theoretic framework. | Singh V, Singh V. | Sci Rep 13 (1) 2023 |
| PPR706456 | Synergistic control of chloroplast biogenesis byMYB-relatedandGolden2-liketranscription factors | Frangedakis E, Yelina NE, Billakurthi K, Schreier T, Dickinson PJ, Tomaselli M, Haseloff J, Hibberd JM. | preprint (2023) |
| 37686287 | Identification and Characterization of the BBX Gene Family in Bambusa pervariabilis × Dendrocalamopsis grandis and Their Potential Role under Adverse Environmental Stresses. | Liu Y, Wang Y, Liao J, Chen Q, Jin W, Li S, Zhu T, Li S. | Int J Mol Sci 24 (17) 2023 |
| 38592871 | Transcriptome Analysis of Intermittent Light Induced Early Bolting in Flowering Chinese Cabbage. | Hu C, Sun D, Yu J, Chen M, Xue Y, Wang J, Su W, Chen R, Anwar A, Song S. | Plants (Basel) 13 (6) 2024 |
| 37836248 | Regulation of Flowering Time and Other Developmental Plasticities by 3' Splicing Factor-Mediated Alternative Splicing in Arabidopsis thaliana. | Lee KC, Kim YC, Kim JK, Lee H, Lee JH. | Plants (Basel) 12 (19) 2023 |
| 38397191 | Genome-Wide Classification of Myb Domain-Containing Protein Families in Entamoeba invadens. | Cuellar P, Castañeda-Ortiz EJ, Rosales-Zarza C, Martínez-Rodríguez CE, Canela-Pérez I, Rodríguez MA, Valdés J, Azuara-Liceaga E. | Genes (Basel) 15 (2) 2024 |
| 36028981 | A competition-attenuation mechanism modulates thermoresponsive growth at warm temperatures in plants. | Li W, Tian YY, Li JY, Yuan L, Zhang LL, Wang ZY, Xu X, Davis SJ, Liu JX. | New Phytol 237 (1) 2023 |
| PMC10671530 | Linking New Alleles at the Oscillator Loci to Flowering and Expansion of Asian Rice | Gao G, Chen M, Mo R, Li N, Xu Y, Lu Y. | Genes (Basel) 14 (11) 2023 |
| 38203634 | Genome-Wide Analysis of MYB Genes in Primulina eburnea (Hance) and Identification of Members in Response to Drought Stress. | Zhang J, Zhang Y, Feng C. | Int J Mol Sci 25 (1) 2023 |
| 38248329 | Genome-Wide Identification and Expression Analyses of the FAR1/FHY3 Gene Family Provide Insight into Inflorescence Development in Maize. | Tang H, Jing, Liu C, Xie X, Zhang L, Chen X, Li C. | Curr Issues Mol Biol 46 (1) 2024 |
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Gramene release 68 - Nov 2023 © EMBL-EBI EMBL-EBI
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