Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Regulation
External references
Supporting evidence
ID History
- Gene history
Gramene Search

Configure this page

Export data

Share this page

Bookmark this page

Gramene is produced in collaboration with Ensembl Plants

.

Gene: PHYA AT1G09570

.

Description

phytochrome A [Source:NCBI gene (formerly Entrezgene);Acc:837483]

Gene Synonyms

ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, phytochrome A

Location

Chromosome 1: 3,095,160-3,100,819 reverse strand.

About this gene

This gene has 6 transcripts (splice variants), 171 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
PHYA-203	AT1G09570.3	4079	1126aa	AT1G09570.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8AVD9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
PHYA-204	AT1G09570.5	4595	1122aa	AT1G09570.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W883 P14712	-	-
PHYA-205	AT1G09570.6	4549	1122aa	AT1G09570.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W883 P14712	-	-
PHYA-201	AT1G09570.1	4387	1122aa	AT1G09570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W883 P14712	-	-
PHYA-202	AT1G09570.4	3841	1122aa	AT1G09570.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178W883 P14712	-	-
PHYA-206	AT1G09570.2	3738	1014aa	AT1G09570.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

.

Pan-taxonomic Compara

.

Genomic alignments (Not available)

Gene tree

Orthologues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data