Arabidopsis thaliana (TAIR10) ▼ 
Summary
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phytochrome A [Source:NCBI gene (formerly Entrezgene);Acc:837483]
ELONGATED HYPOCOTYL 8, F14J9.23, F14J9_23, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, phytochrome A
Chromosome 1: 3,095,160-3,100,819 reverse strand.
This gene has 6 transcripts (splice variants), 171 orthologues and 15 paralogues.
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Showing the top 50 hits from Europe PubMed Central
| PubMed ID | Title | Authors | Journal |
|---|---|---|---|
| 38152059 | EID1 promotes the response to canopy shade in Arabidopsis thaliana by repressing the action of phytochrome A. | Staudt AM, Kretsch T, Hiltbrunner A. | MicroPubl Biol 2023 2023 |
| 38401766 | Plant-specific environmental and developmental signals regulate the mismatch repair protein MSH6 in Arabidopsis thaliana. | Gonzalez V, Figueroa NR, Spampinato CP. | Plant Sci 342 2024 |
| 38337941 | Unveiling Molecular Signatures in Light-Induced Seed Germination: Insights from PIN3, PIN7, and AUX1 in Arabidopsis thaliana. | Tognacca RS, Ljung K, Botto JF. | Plants (Basel) 13 (3) 2024 |
| 38166030 | Cooperative transcriptional regulation by ATAF1 and HY5 promotes light-induced cotyledon opening in Arabidopsis thaliana. | Yao X, Fang K, Qiao K, Xiong J, Lan J, Chen J, Tian Y, Kang X, Lei W, Zhang D, Lin H, Lin H. | Sci Signal 17 (817) 2024 |
| 37887291 | Role of Phytochromes in Red Light-Regulated Alternative Splicing in Arabidopsis thaliana: Impactful but Not Indispensable. | Careno DA, Assaf CH, Eggermont EDC, Canelo M, Cerdán PD, Yanovsky MJ. | Cells 12 (20) 2023 |
| 37670114 | Regulation of early seedling establishment and root development in Arabidopsis thaliana by light and carbohydrates. | Pasternak T, Kircher S, Palme K, Pérez-Pérez JM. | Planta 258 (4) 2023 |
| 37600200 | Arogenate dehydratases: unique roles in light-directed development during the seed-to-seedling transition in Arabidopsis thaliana. | Muhammad D, Alameldin HF, Oh S, Montgomery BL, Warpeha KM. | Front Plant Sci 14 2023 |
| 37374167 | The Splicing Factor SR45 Negatively Regulates Anthocyanin Accumulation under High-Light Stress in Arabidopsis thaliana. | Albaqami M. | Life (Basel) 13 (6) 2023 |
| PPR699946 | A conserved graft formation process inPicea abiesandArabidopsis thalianaidentifies the PAT gene family as central regulators of wound healing | Feng M, Zhang A, Nguyen V, Bisht A, Almqvist C, Veylder LD, Carlsbecker A, Melnyk CW. | preprint (2023) |
| 37172323 | Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana. | Roessner C, Bhide AS, Hoffmeier A, Schenk J, Groß T, Gramzow L, Theißen G, Becker A. | Mol Biol Evol 40 (5) 2023 |
| 35687579 | Photoreceptors' gene expression of Arabidopsis thaliana grown with biophilic LED-sourced lighting systems. | Beatrice P, Chiatante D, Scippa GS, Montagnoli A. | PLoS One 17 (6) 2022 |
| 36545005 | COP1 mutation causes low leaf temperature under various abiotic stresses in Arabidopsis thaliana. | Kim JY, Lee SJ, Min WK, Cha S, Song JT, Seo HS. | Plant Direct 6 (12) 2022 |
| 36161012 | Functional analysis of PHYB polymorphisms in Arabidopsis thaliana collected in Patagonia. | Ruiz-Diaz MJ, Matsusaka D, Cascales J, Sánchez DH, Sánchez-Lamas M, Cerdán PD, Botto JF. | Front Plant Sci 13 2022 |
| 35720591 | Phytochrome-Dependent Regulation of ZFP6 and ZFPH Impacts Photomorphogenesis in Arabidopsis thaliana. | Cota-Ruiz K, Oh S, Montgomery BL. | Front Plant Sci 13 2022 |
| 35916255 | Characteristics analysis of Early Responsive to Dehydration genes in Arabidopsis thaliana (AtERD). | Wu G, Tian N, She F, Cao A, Wu W, Zheng S, Yang N. | Plant Signal Behav 18 (1) 2023 |
| 35628112 | Genetic Dissection of Light-Regulated Adventitious Root Induction in Arabidopsis thaliana Hypocotyls. | Zeng Y, Schotte S, Trinh HK, Verstraeten I, Li J, Van de Velde E, Vanneste S, Geelen D. | Int J Mol Sci 23 (10) 2022 |
| 36012613 | Label-Free Quantitative Proteomics Reveal the Involvement of PRT6 in Arabidopsis thaliana Seed Responsiveness to Ethylene. | Wang X, Davanture M, Zivy M, Bailly C, Nambara E, Corbineau F. | Int J Mol Sci 23 (16) 2022 |
| 36233359 | HFR1, a bHLH Transcriptional Regulator from Arabidopsis thaliana, Improves Grain Yield, Shade and Osmotic Stress Tolerances in Common Wheat. | Sun G, Yang L, Zhan W, Chen S, Song M, Wang L, Jiang L, Guo L, Wang K, Ye X, Gou M, Zheng X, Yang J, Yan Z. | Int J Mol Sci 23 (19) 2022 |
| 35351902 | The phytochrome interacting proteins ERF55 and ERF58 repress light-induced seed germination in Arabidopsis thaliana. | Li Z, Sheerin DJ, von Roepenack-Lahaye E, Stahl M, Hiltbrunner A. | Nat Commun 13 (1) 2022 |
| 38475739 | Combining GWAS and comparative genomics to fine map candidate genes for days to flowering in mung bean. | Chiteri KO, Rairdin A, Sandhu K, Redsun S, Farmer A, O'Rourke JA, Cannon SB, Singh A. | BMC Genomics 25 (1) 2024 |
| 34485750 | Stomatal development and genetic expression in Arabidopsis thaliana L. | Chowdhury MR, Ahamed MS, Mas-Ud MA, Islam H, Fatamatuzzohora M, Hossain MF, Billah M, Hossain MS, Matin MN. | Heliyon 7 (8) 2021 |
| 34071961 | Beyond the Genetic Pathways, Flowering Regulation Complexity in Arabidopsis thaliana. | Quiroz S, Yustis JC, Chávez-Hernández EC, Martínez T, Sanchez MP, Garay-Arroyo A, Álvarez-Buylla ER, García-Ponce B. | Int J Mol Sci 22 (11) 2021 |
| 33958633 | ATHB2 is a negative regulator of germination in Arabidopsis thaliana seeds. | Tognacca RS, Carabelli M, Morelli G, Ruberti I, Botto JF. | Sci Rep 11 (1) 2021 |
| 36552745 | Independent Responses of Photosynthesis and Plant Morphology to Alterations of PIF Proteins and Light-Dependent MicroRNA Contents in Arabidopsis thaliana pif Mutants Grown under Lights of Different Spectral Compositions. | Pashkovskiy P, Kreslavski V, Khudyakova A, Pojidaeva ES, Kosobryukhov A, Kuznetsov V, Allakhverdiev SI. | Cells 11 (24) 2022 |
| 35265091 | Dynamics of Etiolation Monitored by Seedling Morphology, Carotenoid Composition, Antioxidant Level, and Photoactivity of Protochlorophyllide in Arabidopsis thaliana. | Jedynak P, Trzebuniak KF, Chowaniec M, Zgłobicki P, Banaś AK, Mysliwa-Kurdziel B. | Front Plant Sci 12 2021 |
| 34884732 | Cryptochrome 2 from Lilium × formolongi Regulates Photoperiodic Flowering in Transgenic Arabidopsis thaliana. | Wu XM, Yang ZM, Yang LH, Chen JR, Chen HX, Zheng SX, Zeng JG, Jia GX, Li YF. | Int J Mol Sci 22 (23) 2021 |
| 34729159 | High-resolution imaging as a tool for identifying quantitative trait loci that regulate photomorphogenesis in Arabidopsis thaliana. | Deslauriers SD. | AoB Plants 13 (5) 2021 |
| 34276733 | New Insights on the Regulation of Glucosinolate Biosynthesis via COP1 and DELLA Proteins in Arabidopsis Thaliana. | Frerigmann H, Hoecker U, Gigolashvili T. | Front Plant Sci 12 2021 |
| 38252634 | Genetic regulation of self-organizing azimuthal canopy orientations and their impacts on light interception in maize. | Zhou Y, Kusmec A, Schnable PS. | Plant Cell 36 (5) 2024 |
| 34108981 | Cryo-Electron Microscopy of Arabidopsis thaliana Phytochrome A in Its Pr State Reveals Head-to-Head Homodimeric Architecture. | Wahlgren WY, Golonka D, Westenhoff S, Möglich A. | Front Plant Sci 12 2021 |
| 38417841 | Flowering time: From physiology, through genetics to mechanism. | Maple R, Zhu P, Hepworth J, Wang JW, Dean C. | Plant Physiol 195 (1) 2024 |
| 32742313 | Twenty years of transposable element analysis in the Arabidopsis thaliana genome. | Quesneville H. | Mob DNA 11 2020 |
| 33888582 | ARABIDOPSIS THALIANA HOMEOBOX GENE 1 controls plant architecture by locally restricting environmental responses. | Ejaz M, Bencivenga S, Tavares R, Bush M, Sablowski R. | Proc Natl Acad Sci U S A 118 (17) 2021 |
| 32067033 | Genetic and molecular basis of floral induction in Arabidopsis thaliana. | Kinoshita A, Richter R. | J Exp Bot 71 (9) 2020 |
| PPR810692 | Photoreceptor–induced sinapate synthesis contributes to photoprotection in Arabidopsis | Leonardelli M, Tissot N, Podolec R, Ares-Orpel F, Glauser G, Ulm R, Demarsy E. | preprint (2024) |
| 33372050 | Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor. | Struk S, De Cuyper C, Jacobs A, Braem L, Walton A, De Keyser A, Depuydt S, Vu LD, De Smet I, Boyer FD, Eeckhout D, Persiau G, Gevaert K, De Jaeger G, Goormachtig S. | Mol Cell Proteomics 20 2021 |
| 38412703 | Applications of fluorescence spectroscopy in the investigation of plant phytochrome invivo. | Sineshchekov VA. | Plant Physiol Biochem 208 2024 |
| 33424896 | Regulation of Early Plant Development by Red and Blue Light: A Comparative Analysis Between Arabidopsis thaliana and Solanum lycopersicum. | Spaninks K, van Lieshout J, van Ieperen W, Offringa R. | Front Plant Sci 11 2020 |
| 38431282 | Light signaling in plants-a selective history. | Huq E, Lin C, Quail PH. | Plant Physiol 195 (1) 2024 |
| 31828800 | ABA INSENSITIVE4 promotes rather than represses PHYA-dependent seed germination in Arabidopsis thaliana. | Barros-Galvão T, Dave A, Gilday AD, Harvey D, Vaistij FE, Graham IA. | New Phytol 226 (4) 2020 |
| 38251425 | PHYTOCHROME A controls the DNA damage response and cell death tolerance within the Arabidopsis root meristem. | Huerta-Venegas PI, Raya-González J, Ruíz-Herrera LF, López-Bucio J. | Plant Cell Environ 47 (5) 2024 |
| 38586380 | Photoperiodic and lighting treatments for flowering control and its genetic regulation in sugarcane breeding. | Wickramasinghe KP, Kong CY, Lin XQ, Zhao PF, Mehdi F, Li XJ, Liu XL, Mao J, Lu X. | Heliyon 10 (7) 2024 |
| 38344182 | Functional dissection of phytochrome A in plants. | Lei Y, Ma Q, Zhang Y, Li J, Ning X, Wang Y, Ge X, Zhao H, Lin H. | Front Plant Sci 15 2024 |
| 38635077 | Disrupting FKF1 homodimerization increases FT transcript levels in the evening by enhancing CO stabilization. | Cho SW, Lokhandwala J, Park JS, Kang HW, Choi M, Yang HQ, Imaizumi T, Zoltowski BD, Song YH. | Plant Cell Rep 43 (5) 2024 |
| 32002990 | Nuclear-encoded sigma factor 6 (SIG6) is involved in the block of greening response in Arabidopsis thaliana. | Alameldin HF, Oh S, Hernandez AP, Montgomery BL. | Am J Bot 107 (2) 2020 |
| 38088490 | Low temperature-mediated repression and far-red light-mediated induction determine morning FLOWERING LOCUS T expression levels. | Kim H, Kang HW, Hwang DY, Lee N, Kubota A, Imaizumi T, Song YH. | J Integr Plant Biol 66 (1) 2024 |
| 38545394 | Phytochrome phosphorylation in plant light signaling. | Han YJ, Kim SH, Kim JI. | Front Plant Sci 15 2024 |
| PPR817454 | Hypsochromic shift of phyC complements the inhibition of hypocotyl elongation under moderate red/far-red light | Yoshihara S, Okajima K, Tokutomi S. | preprint (2024) |
| 37216398 | Arabidopsis FIN219/JAR1 interacts with phytochrome A under far-red light and jasmonates in regulating hypocotyl elongation via a functional demand manner. | Jiang HW, Peng KC, Hsu TY, Chiou YC, Hsieh HL. | PLoS Genet 19 (5) 2023 |
| 38247523 | Application of Multi-Omics Technologies to the Study of Phytochromes in Plants. | Wu S, Gao Y, Zhang Q, Liu F, Hu W. | Antioxidants (Basel) 13 (1) 2024 |
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Gramene release 68 - Nov 2023 © EMBL-EBI EMBL-EBI
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