Arabidopsis thaliana (TAIR10) ▼ 
Summary
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phytochrome interacting factor 3-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:825382]
phytochrome interacting factor 3-like 2, PHYTOCHROME-INTERACTING FACTOR 6, PIF6
Chromosome 3: 22,988,547-22,990,709 reverse strand.
This gene has 4 transcripts (splice variants), 67 orthologues and 40 paralogues.
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Showing the top 50 hits from Europe PubMed Central
| PubMed ID | Title | Authors | Journal |
|---|---|---|---|
| 38431568 | NnARF17 and NnARF18 from lotus promote root formation and modulate stress tolerance in transgenic Arabidopsis thaliana. | Libao C, Shiting L, Chen Z, Shuyan L. | BMC Plant Biol 24 (1) 2024 |
| 33958633 | ATHB2 is a negative regulator of germination in Arabidopsis thaliana seeds. | Tognacca RS, Carabelli M, Morelli G, Ruberti I, Botto JF. | Sci Rep 11 (1) 2021 |
| 31740936 | Targeted misexpression of NAC052, acting in H3K4 demethylation, alters leaf morphological and anatomical traits in Arabidopsis thaliana. | van Rooijen R, Schulze S, Petzsch P, Westhoff P. | J Exp Bot 71 (4) 2020 |
| 31552074 | Alternative Splicing Regulation During Light-Induced Germination of Arabidopsis thaliana Seeds. | Tognacca RS, Servi L, Hernando CE, Saura-Sanchez M, Yanovsky MJ, Petrillo E, Botto JF. | Front Plant Sci 10 2019 |
| PMC10669900 | PSI Photoinhibition and Changing CO2 Levels Initiate Retrograde Signals to Modify Nuclear Gene Expression | Antioxidants (Basel) 12 (11) 2023 | |
| 30677094 | INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana. | Völz R, Kim SK, Mi J, Rawat AA, Veluchamy A, Mariappan KG, Rayapuram N, Daviere JM, Achard P, Blilou I, Al-Babili S, Benhamed M, Hirt H. | PLoS Pathog 15 (1) 2019 |
| 38664420 | Photobody formation spatially segregates two opposing phytochrome B signaling actions of PIF5 degradation and stabilization. | Kim RJA, Fan, He J, Kim K, Du J, Chen M. | Nat Commun 15 (1) 2024 |
| 28911330 | Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination. | Narsai R, Gouil Q, Secco D, Srivastava A, Karpievitch YV, Liew LC, Lister R, Lewsey MG, Whelan J. | Genome Biol 18 (1) 2017 |
| 28628628 | Transcriptional mechanisms associated with seed dormancy and dormancy loss in the gibberellin-insensitive sly1-2 mutant of Arabidopsis thaliana. | Nelson SK, Steber CM. | PLoS One 12 (6) 2017 |
| 36674933 | Basic Helix-Loop-Helix Transcription Factors: Regulators for Plant Growth Development and Abiotic Stress Responses. | Zuo ZF, Lee HY, Kang HG. | Int J Mol Sci 24 (2) 2023 |
| 36499652 | Comprehensive Analysis of Betula platyphylla Suk. PIF Gene Family and Their Potential Functions in Growth and Development. | Chen A, Huang P, Guo S, Liu S, Hu X, Liu X. | Int J Mol Sci 23 (23) 2022 |
| 36674474 | Characterization of Transcriptome Dynamics during Early Fruit Development in Olive (Olea europaea L.). | Camarero MC, Briegas B, Corbacho J, Labrador J, Gallardo M, Gomez-Jimenez MC. | Int J Mol Sci 24 (2) 2023 |
| 24409190 | Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress. | Barah P, Jayavelu ND, Mundy J, Bones AM. | Front Plant Sci 4 2013 |
| 34281206 | Basic Helix-Loop-Helix (bHLH) Transcription Factors Regulate a Wide Range of Functions in Arabidopsis. | Hao Y, Zong X, Ren P, Qian Y, Fu A. | Int J Mol Sci 22 (13) 2021 |
| 37008485 | Alternative splicing in ABA signaling during seed germination. | Sybilska E, Daszkowska-Golec A. | Front Plant Sci 14 2023 |
| 35674369 | Core circadian clock and light signaling genes brought into genetic linkage across the green lineage. | Michael TP. | Plant Physiol 190 (2) 2022 |
| 25809152 | A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds. | Costa MC, Righetti K, Nijveen H, Yazdanpanah F, Ligterink W, Buitink J, Hilhorst HW. | Planta 242 (2) 2015 |
| 23035751 | Insights into the molecular mechanism of RGL2-mediated inhibition of seed germination in Arabidopsis thaliana. | Stamm P, Ravindran P, Mohanty B, Tan EL, Yu H, Kumar PP. | BMC Plant Biol 12 2012 |
| 32694206 | Allosteric deactivation of PIFs and EIN3 by microproteins in light control of plant development. | Wu Q, Kuang K, Lyu M, Zhao Y, Li Y, Li J, Pan Y, Shi H, Zhong S. | Proc Natl Acad Sci U S A 117 (31) 2020 |
| 36967993 | RNA sequencing-based exploration of the effects of far-red light on microRNAs involved in the shade-avoidance response of D. officinale. | Yang Y, Qiu Y, Ye W, Sun G, Li H. | PeerJ 11 2023 |
| 35251080 | Chromatin Changes in Phytochrome Interacting Factor-Regulated Genes Parallel Their Rapid Transcriptional Response to Light. | González-Grandío E, Álamos S, Zhang Y, Dalton-Roesler J, Niyogi KK, García HG, Quail PH. | Front Plant Sci 13 2022 |
| 34556672 | Direct photoresponsive inhibition of a p53-like transcription activation domain in PIF3 by Arabidopsis phytochrome B. | Yoo CY, He J, Sang Q, Qiu Y, Long L, Kim RJ, Chong EG, Hahm J, Morffy N, Zhou P, Strader LC, Nagatani A, Mo B, Chen X, Chen M. | Nat Commun 12 (1) 2021 |
| 35674379 | Shade triggers posttranscriptional PHYTOCHROME-INTERACTING FACTOR-dependent increases in H3K4 trimethylation. | Calderon RH, Dalton J, Zhang Y, Quail PH. | Plant Physiol 190 (3) 2022 |
| 20351290 | Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana. | Nelson DC, Flematti GR, Riseborough JA, Ghisalberti EL, Dixon KW, Smith SM. | Proc Natl Acad Sci U S A 107 (15) 2010 |
| 35955637 | Underlying Biochemical and Molecular Mechanisms for Seed Germination. | Farooq MA, Ma W, Shen S, Gu A. | Int J Mol Sci 23 (15) 2022 |
| 34039282 | Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite. | Cassan O, Lèbre S, Martin A. | BMC Genomics 22 (1) 2021 |
| 32392219 | UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis. | Tavridou E, Schmid-Siegert E, Fankhauser C, Ulm R. | PLoS Genet 16 (5) 2020 |
| 33693822 | Phytochrome regulates cellular response plasticity and the basic molecular machinery of leaf development. | Romanowski A, Furniss JJ, Hussain E, Halliday KJ. | Plant Physiol 186 (2) 2021 |
| 32679774 | Distinct Responses to Light in Plants. | Teixeira RT. | Plants (Basel) 9 (7) 2020 |
| 30739171 | Immediate visualization of recombination events and chromosome segregation defects in fission yeast meiosis. | Li D, Roca M, Yuecel R, Lorenz A. | Chromosoma 128 (3) 2019 |
| 33614278 | RNA sequencing-based exploration of the effects of far-red light on lncRNAs involved in the shade-avoidance response of D. officinale. | Li H, Ye W, Wang Y, Chen X, Fang Y, Sun G. | PeerJ 9 2021 |
| 12826627 | A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. | Yamashino T, Matsushika A, Fujimori T, Sato S, Kato T, Tabata S, Mizuno T. | Plant Cell Physiol 44 (6) 2003 |
| 33027937 | Identification of Phytochrome-Interacting Factor Family Members and Functional Analysis of MdPIF4 in Malus domestica. | Zheng PF, Wang X, Yang YY, You CX, Zhang ZL, Hao YJ. | Int J Mol Sci 21 (19) 2020 |
| 32492790 | An Updated Overview on the Regulation of Seed Germination. | Carrera-Castaño G, Calleja-Cabrera J, Pernas M, Gómez L, Oñate-Sánchez L. | Plants (Basel) 9 (6) 2020 |
| 29891774 | Genome-Wide Identification and Characterization of Warming-Related Genes in Brassica rapa ssp. pekinensis. | Song H, Dong X, Yi H, Ahn JY, Yun K, Song M, Han CT, Hur Y. | Int J Mol Sci 19 (6) 2018 |
| 32053251 | The bHLH network underlying plant shade-avoidance. | Buti S, Hayes S, Pierik R. | Physiol Plant 169 (3) 2020 |
| 29403515 | Functional Characterization of the Maize Phytochrome-Interacting Factors PIF4 and PIF5. | Shi Q, Zhang H, Song X, Jiang Y, Liang R, Li G. | Front Plant Sci 8 2017 |
| 31548376 | Fine control of aerenchyma and lateral root development through AUX/IAA- and ARF-dependent auxin signaling. | Yamauchi T, Tanaka A, Inahashi H, Nishizawa NK, Tsutsumi N, Inukai Y, Nakazono M. | Proc Natl Acad Sci U S A 116 (41) 2019 |
| 32068156 | Light Perception: A Matter of Time. | Sanchez SE, Rugnone ML, Kay SA. | Mol Plant 13 (3) 2020 |
| 29844157 | Genome-wide regulation of light-controlled seedling morphogenesis by three families of transcription factors. | Shi H, Lyu M, Luo Y, Liu S, Li Y, He H, Wei N, Deng XW, Zhong S. | Proc Natl Acad Sci U S A 115 (25) 2018 |
| 28711729 | Expanding Roles of PIFs in Signal Integration from Multiple Processes. | Paik I, Kathare PK, Kim JI, Huq E. | Mol Plant 10 (8) 2017 |
| 28810832 | Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon. | Niu X, Guan Y, Chen S, Li H. | BMC Genomics 18 (1) 2017 |
| 26496492 | Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits. | van Heerwaarden J, van Zanten M, Kruijer W. | PLoS Genet 11 (10) 2015 |
| 25850831 | DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1. | Santopolo S, Boccaccini A, Lorrai R, Ruta V, Capauto D, Minutello E, Serino G, Costantino P, Vittorioso P. | BMC Plant Biol 15 2015 |
| 27030359 | Regulatory modules controlling early shade avoidance response in maize seedlings. | Wang H, Wu G, Zhao B, Wang B, Lang Z, Zhang C, Wang H. | BMC Genomics 17 2016 |
| 27282989 | DELLA-mediated PIF degradation contributes to coordination of light and gibberellin signalling in Arabidopsis. | Li K, Yu R, Fan LM, Wei N, Chen H, Deng XW. | Nat Commun 7 2016 |
| 28586421 | FRUITFULL controls SAUR10 expression and regulates Arabidopsis growth and architecture. | Bemer M, van Mourik H, Muiño JM, Ferrándiz C, Kaufmann K, Angenent GC. | J Exp Bot 68 (13) 2017 |
| 28893189 | Differentially expressed genes during the imbibition of dormant and after-ripened seeds - a reverse genetics approach. | Yazdanpanah F, Hanson J, Hilhorst HWM, Bentsink L. | BMC Plant Biol 17 (1) 2017 |
| 27507985 | Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark. | Gangl R, Tenhaken R. | Front Plant Sci 7 2016 |
| 27925216 | Light Regulation of Alternative Pre-mRNA Splicing in Plants. | Zhang H, Lin C, Gu L. | Photochem Photobiol 93 (1) 2017 |
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