Gramene Ontology Statistics

Dbstat

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Ontologies in Gramene

Plant Ontology

Plant Structure (morphology, organs, tissue and cell types)(PO)

Growth stages (plant growth and developmental stages)(GRO)

Trait Ontology (TO)

Plant traits and phenotypes

Gene Ontology (GO)

Molecular function

Biological process

Cellular component

Environment Ontology (EO)

Gramene's taxonomy ontology (GR_tax)

Ontologies Database Statistics

V26
Sept 2007 V25
June 2007 V24
March 2007 V23
November 2006 V22
September 2006 V21
May 2006 V20
March 2006 V19
October 2005 V18 V17
Ontology Terms
No. GO terms 24,936 24,234 23,634 22,568 21,517 20,659 20,530 19,498 18,969
No. TO terms 834 829 779 778 769 722 722 693 661
No. PO terms 834 828 797 787 778 754 730 684 682
No. GRO terms 236 236 236 236 236 236 236 236 236
No. EO terms 497 497 497 491 490 490 490 490 479
No. GR_tax terms 2,699 2,619 2,526 2,478 2,407 2,404 2,241 2,204 2,156
Total 30,036 29,524 28,752 27,619 26,471 25,265 24,949 23,805 23,183

No. Ontology Associations
GO Associations 455,272 356,704 347,632 258,754 245,392 240,769 225,211 194,631 194002
GO: Biological Process Associations 122,982 91,845 99,121 72,758 70,302 68,402 63,828 54,811 54687
GO: Cellular Component Associations 181,488 169,633 114,263 86,045 75,316 73,796 70,701 63,606 63166
GO: Molecular Function Associations 150,802 95,226 134,248 99,951 99,774 98,571 90,682 76,214 76149
TO Associations 13,846 13,741 13,161 12,358 11,791 11,357 10,970 10,679 9182
PO Associations 16,057 15,924 14,180 2,063 1,354 1,210 1,188 896 856
GRO Associations 16,118 16,081 4,699 1,945 1,893 1,751 1,674 1,343 1332
EO Associations 596 566 552 413
Gr_Tax Associations 185,279 180,848 117,906 113,876 97,518 96,078 95,041 79,644 77704
Total Associations: 705,606 602,317 512,041 391,761 360,376 351,487 334,365 287,193 283,076

No. Terms in Ontology Associations
GO 3,585 3,364 2,474 1,710 1,674 1,616 1,518 1,479 1477
GO: Biological Process terms 1,544 1,473 983 622 604 565 536 514 510
GO: Cellular Component 403 377 259 204 198 189 178 175 176
GO: Molecular Function 1,638 1,514 1,232 884 872 862 804 790 791
TO 484 484 460 423 387 376 375 365 331
PO 158 151 138 85 74 70 70 47 44
GRO 91 90 94 42 38 38 37 10 9
EO 56 50 49 44
Gr_tax 1,419 1,328 1,246 1,186 1,120 1,074 1,040 1,002 952
Total 5,856 5,529 4,515 3,532 3,368 3,211 3,077 2,903 2813

Proteins with Associations
GO Associations 102,129 101,312 65,793 63,842 55,211 54,349 54,194 49,565 49249
GO Biological Process Associations 18,363 18,470 27,578 27,086 25,445 25,009 24,986 23,997 23905
GO Cellular Component Associations 95,389 94,567 59,030 57,074 48,436 47,764 47,619 42,982 42688
GO Molecular Function Associations 21,513 21,509 21,626 21,537 21,552 21,122 21,129 21,138 21096
TO Associations 146 143 130 81 64 9 2
PO Associations 195 179 162 113 93 47 47 21 19
GRO Associations 192 173 176 116 98 70 49
EO Associations 139 136 143 87 68 47 26
Gr_tax Associations 161,538 159,664 97,030 93,712 77,804 76,745 76,512 68,122 67647

Ensemble Genes with Associations
GO Associations 29,877 24,386 24,386 24,386 23,286 21,369 21,369 21369
GO: Biological Process Associations 23,821 18,759 18,759 18,759 18,759 16,401 16,401 16401
GO Cellular Component Associations 14,741 7,185 7,185 7,185 7,185 5,273 5,273 5273
GO Molecular Function Associations 28,018 23,005 23,005 23,005 23,005 20,016 20,016 20016

Ensemble Rice Genes with Associations
GO Associations 14,980
GO: Biological Process Associations 10,499
GO Cellular Component Associations 8,698
GO Molecular Function Associations 13,218

Ensemble Maize Genes with Associations
GO Associations 6,097 6,097 6,097 6,097
GO: Biological Process Associations 5,018 5,018 5,018 5,018
GO: Cellular Component Associations 966 966 966 966
GO: w/Molecular Function Associations 5,974 5,974 5,974 5,974

Ensemble Arabidopsis Genes with Associations
GO Associations 27,114 27,114 25,727
GO: Biological Process Associations 23,048 23,048 21,779
GO: Cellular Component Associations 25,046 25,046 22,986
GO: w/Molecular Function Associations 24,364 24,364 23,001

No. Genes with Associations
w/GO Associations 2,488 2,464 2,075 1,376 832
GO: Biological Brocess Associations 2,154 2,135 1,835 1,154 730
GO: Cellular Component Associations 1,182 1,164 1,066 622 378
GO: Molecular Function Associations 785 763 678 499 293
TO associations 1,178 1,174 936 678 453 447 435 428 420
PO associations 1,650 1,637 1,321 773 474 468 466 430 423
GRO associations 1,126 1,114 995 511 500 496 482 430 423
EO associations 123 118 112 81 7 66 50
Gr_tax associations 11,747 9,307 9,227 8,783 8,542 8,474 8,215 1,488 1488

QTL with Ontology Associations 11,536 11,437
TO Associations 11,536 11,209 10,961 10,791 10,495 10,147 9,871 8396
Plant Structure Associations 11,277 11,277 11,173 10,961 10,791 10,495 10,147 9,871 8396
Gr_tax Associations 8,390 8,390 11,209 10,961 10,791 10,495 10,147 9,871 8410

No. Marker library with Associations
PO Associations 202 202 202 202 201 201 201
GRO Associations 200 200 200 200 200 200 200
EO Associations 201 201 201 201 201 201 201

Marker species with Gr_tax Associations 265 247 245 228 212 207

Map sets with Gr_tax Associations 193 193 195 192 169 157 167 163 159

Associations by Evidence Type
Associations with only non-IEA 389,651 384,335 261,328 179,712 152,785 173,765 171,964 149,226 145367
Associations with only IEA 309,230 211,291 247,085 208,543 204,827 175,662 160,340 135,875 135572
Associations both IEA and non-IEA 6,725 6,691 3,628 3,506 2,764 2,988 2,061 2,092 2137

Evidences in Associations 747,588 644,392 421,147 389,563 401,784 381,218 333,143 328267
No. IEA Evidences in Associations 316,303 218,332 212,387 207,928 200,460 185,166 160,809 160457
No. non-IEA evidences in Associations 431,285 426,060 208,760 181,635 201,324 196,052 172,334 167810
Literature references used as Evidence in Associations 2,069 1,984 2,042 2,986 2,988 1,802 1,772 1732

	V26 Sept 2007	V25 June 2007	V24 March 2007	V23 November 2006	V22 September 2006	V21 May 2006	V20 March 2006	V19 October 2005	V18	V17
Ontology Terms
No. GO terms	24,936	24,234	23,634	22,568	21,517	20,659	20,530	19,498	18,969
No. TO terms	834	829	779	778	769	722	722	693	661
No. PO terms	834	828	797	787	778	754	730	684	682
No. GRO terms	236	236	236	236	236	236	236	236	236
No. EO terms	497	497	497	491	490	490	490	490	479
No. GR_tax terms	2,699	2,619	2,526	2,478	2,407	2,404	2,241	2,204	2,156
Total	30,036	29,524	28,752	27,619	26,471	25,265	24,949	23,805	23,183

No. Ontology Associations
GO Associations	455,272	356,704	347,632	258,754	245,392	240,769	225,211	194,631	194002
GO: Biological Process Associations	122,982	91,845	99,121	72,758	70,302	68,402	63,828	54,811	54687
GO: Cellular Component Associations	181,488	169,633	114,263	86,045	75,316	73,796	70,701	63,606	63166
GO: Molecular Function Associations	150,802	95,226	134,248	99,951	99,774	98,571	90,682	76,214	76149
TO Associations	13,846	13,741	13,161	12,358	11,791	11,357	10,970	10,679	9182
PO Associations	16,057	15,924	14,180	2,063	1,354	1,210	1,188	896	856
GRO Associations	16,118	16,081	4,699	1,945	1,893	1,751	1,674	1,343	1332
EO Associations	596	566	552	413
Gr_Tax Associations	185,279	180,848	117,906	113,876	97,518	96,078	95,041	79,644	77704
Total Associations:	705,606	602,317	512,041	391,761	360,376	351,487	334,365	287,193	283,076

No. Terms in Ontology Associations
GO	3,585	3,364	2,474	1,710	1,674	1,616	1,518	1,479	1477
GO: Biological Process terms	1,544	1,473	983	622	604	565	536	514	510
GO: Cellular Component	403	377	259	204	198	189	178	175	176
GO: Molecular Function	1,638	1,514	1,232	884	872	862	804	790	791
TO	484	484	460	423	387	376	375	365	331
PO	158	151	138	85	74	70	70	47	44
GRO	91	90	94	42	38	38	37	10	9
EO	56	50	49	44
Gr_tax	1,419	1,328	1,246	1,186	1,120	1,074	1,040	1,002	952
Total	5,856	5,529	4,515	3,532	3,368	3,211	3,077	2,903	2813

Proteins with Associations
GO Associations	102,129	101,312	65,793	63,842	55,211	54,349	54,194	49,565	49249
GO Biological Process Associations	18,363	18,470	27,578	27,086	25,445	25,009	24,986	23,997	23905
GO Cellular Component Associations	95,389	94,567	59,030	57,074	48,436	47,764	47,619	42,982	42688
GO Molecular Function Associations	21,513	21,509	21,626	21,537	21,552	21,122	21,129	21,138	21096
TO Associations	146	143	130	81	64	9	2
PO Associations	195	179	162	113	93	47	47	21	19
GRO Associations	192	173	176	116	98	70	49
EO Associations	139	136	143	87	68	47	26
Gr_tax Associations	161,538	159,664	97,030	93,712	77,804	76,745	76,512	68,122	67647

Ensemble Genes with Associations
GO Associations	29,877		24,386	24,386	24,386	23,286	21,369	21,369	21369
GO: Biological Process Associations	23,821		18,759	18,759	18,759	18,759	16,401	16,401	16401
GO Cellular Component Associations	14,741		7,185	7,185	7,185	7,185	5,273	5,273	5273
GO Molecular Function Associations	28,018		23,005	23,005	23,005	23,005	20,016	20,016	20016

Ensemble Rice Genes with Associations
GO Associations		14,980
GO: Biological Process Associations		10,499
GO Cellular Component Associations		8,698
GO Molecular Function Associations		13,218

Ensemble Maize Genes with Associations
GO Associations			6,097	6,097	6,097	6,097
GO: Biological Process Associations			5,018	5,018	5,018	5,018
GO: Cellular Component Associations			966	966	966	966
GO: w/Molecular Function Associations			5,974	5,974	5,974	5,974

Ensemble Arabidopsis Genes with Associations
GO Associations	27,114	27,114	25,727
GO: Biological Process Associations	23,048	23,048	21,779
GO: Cellular Component Associations	25,046	25,046	22,986
GO: w/Molecular Function Associations	24,364	24,364	23,001

No. Genes with Associations
w/GO Associations	2,488	2,464	2,075	1,376	832
GO: Biological Brocess Associations	2,154	2,135	1,835	1,154	730
GO: Cellular Component Associations	1,182	1,164	1,066	622	378
GO: Molecular Function Associations	785	763	678	499	293
TO associations	1,178	1,174	936	678	453	447	435	428	420
PO associations	1,650	1,637	1,321	773	474	468	466	430	423
GRO associations	1,126	1,114	995	511	500	496	482	430	423
EO associations	123	118	112	81	7	66	50
Gr_tax associations	11,747	9,307	9,227	8,783	8,542	8,474	8,215	1,488	1488

QTL with Ontology Associations	11,536	11,437
TO Associations	11,536		11,209	10,961	10,791	10,495	10,147	9,871	8396
Plant Structure Associations	11,277	11,277	11,173	10,961	10,791	10,495	10,147	9,871	8396
Gr_tax Associations	8,390	8,390	11,209	10,961	10,791	10,495	10,147	9,871	8410

No. Marker library with Associations
PO Associations	202	202	202	202	201	201	201
GRO Associations	200	200	200	200	200	200	200
EO Associations	201	201	201	201	201	201	201

Marker species with Gr_tax Associations	265	247	245	228	212	207

Map sets with Gr_tax Associations	193	193	195	192	169	157	167	163	159

Associations by Evidence Type
Associations with only non-IEA	389,651	384,335	261,328	179,712	152,785	173,765	171,964	149,226	145367
Associations with only IEA	309,230	211,291	247,085	208,543	204,827	175,662	160,340	135,875	135572
Associations both IEA and non-IEA	6,725	6,691	3,628	3,506	2,764	2,988	2,061	2,092	2137

Evidences in Associations	747,588	644,392		421,147	389,563	401,784	381,218	333,143	328267
No. IEA Evidences in Associations	316,303	218,332		212,387	207,928	200,460	185,166	160,809	160457
No. non-IEA evidences in Associations	431,285	426,060		208,760	181,635	201,324	196,052	172,334	167810
Literature references used as Evidence in Associations	2,069	1,984		2,042	2,986	2,988	1,802	1,772	1732

Last modified: Thu Sep 27 13:49:00 2007